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多功能 ProtDB:一个具有多种功能的人类蛋白质数据库。

MultifacetedProtDB: a database of human proteins with multiple functions.

机构信息

Biocomputing Group, Dept. of Pharmacy and Biotechnology, University of Bologna, Italy.

出版信息

Nucleic Acids Res. 2024 Jan 5;52(D1):D494-D501. doi: 10.1093/nar/gkad783.

Abstract

MultifacetedProtDB is a database of multifunctional human proteins deriving information from other databases, including UniProt, GeneCards, Human Protein Atlas (HPA), Human Phenotype Ontology (HPO) and MONDO. It collects under the label 'multifaceted' multitasking proteins addressed in literature as pleiotropic, multidomain, promiscuous (in relation to enzymes catalysing multiple substrates) and moonlighting (with two or more molecular functions), and difficult to be retrieved with a direct search in existing non-specific databases. The study of multifunctional proteins is an expanding research area aiming to elucidate the complexities of biological processes, particularly in humans, where multifunctional proteins play roles in various processes, including signal transduction, metabolism, gene regulation and cellular communication, and are often involved in disease insurgence and progression. The webserver allows searching by gene, protein and any associated structural and functional information, like available structures from PDB, structural models and interactors, using multiple filters. Protein entries are supplemented with comprehensive annotations including EC number, GO terms (biological pathways, molecular functions, and cellular components), pathways from Reactome, subcellular localization from UniProt, tissue and cell type expression from HPA, and associated diseases following MONDO, Orphanet and OMIM classification. MultiFacetedProtDB is freely available as a web server at: https://multifacetedprotdb.biocomp.unibo.it/.

摘要

多面向蛋白数据库(MultifacetedProtDB)是一个从其他数据库(包括 UniProt、GeneCards、人类蛋白质图谱(HPA)、人类表型本体(HPO)和 MONDO)中获取信息的多功能人类蛋白数据库。它将文献中描述的多任务蛋白(如多效性、多结构域、多功能(与催化多种底物的酶有关)和兼职(具有两个或更多分子功能))归为“多面向”蛋白,并将其收集起来,这些蛋白很难通过在现有的非特异性数据库中进行直接搜索来检索。多功能蛋白的研究是一个不断扩展的研究领域,旨在阐明生物过程的复杂性,特别是在人类中,多功能蛋白在多种过程中发挥作用,包括信号转导、代谢、基因调控和细胞通讯,并且经常涉及疾病的发生和进展。该网络服务器允许通过基因、蛋白质和任何相关的结构和功能信息进行搜索,如 PDB 中的可用结构、结构模型和相互作用物,并使用多个过滤器。蛋白条目还补充了全面的注释,包括 EC 编号、GO 术语(生物途径、分子功能和细胞成分)、Reactome 中的途径、UniProt 中的亚细胞定位、HPA 中的组织和细胞类型表达,以及 MONDO、Orphanet 和 OMIM 分类中的相关疾病。MultifacetedProtDB 可免费在以下网址作为网络服务器使用:https://multifacetedprotdb.biocomp.unibo.it/。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0e95/10767882/cf0ae7df8dfa/gkad783figgra1.jpg

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