Department of Earth System Science, University of California, Irvine, Irvine, CA, USA.
Eco&Sols, University Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France.
Nat Microbiol. 2023 Nov;8(11):2093-2102. doi: 10.1038/s41564-023-01465-0. Epub 2023 Oct 5.
The life history strategies of soil microbes determine their metabolic potential and their response to environmental changes. Yet these strategies remain poorly understood. Here we use shotgun metagenomes from terrestrial biomes to characterize overarching covariations of the genomic traits that capture dominant life history strategies in bacterial communities. The emerging patterns show a triangle of life history strategies shaped by two trait dimensions, supporting previous theoretical and isolate-based studies. The first dimension ranges from streamlined genomes with simple metabolisms to larger genomes and expanded metabolic capacities. As metabolic capacities expand, bacterial communities increasingly differentiate along a second dimension that reflects a trade-off between increasing capacities for environmental responsiveness or for nutrient recycling. Random forest analyses show that soil pH, C:N ratio and precipitation patterns together drive the dominant life history strategy of soil bacterial communities and their biogeographic distribution. Our findings provide a trait-based framework to compare life history strategies of soil bacteria.
土壤微生物的生活史策略决定了它们的代谢潜力及其对环境变化的响应。然而,这些策略仍然知之甚少。在这里,我们使用来自陆地生物群系的鸟枪法宏基因组来描述捕获细菌群落中占主导地位的生活史策略的基因组特征的总体共变。新兴模式显示出由两个特征维度塑造的生活史策略三角形,支持了先前的理论和基于分离物的研究。第一个维度从具有简单代谢的精简基因组到更大的基因组和扩展的代谢能力范围。随着代谢能力的扩展,细菌群落沿着反映环境响应能力或养分再循环能力增加之间权衡的第二个维度越来越分化。随机森林分析表明,土壤 pH 值、C:N 比和降水模式共同驱动了土壤细菌群落的主导生活史策略及其生物地理分布。我们的研究结果提供了一个基于特征的框架来比较土壤细菌的生活史策略。