Department of Critical Care Medicine, Second Hospital of Shanxi Medical University, Taiyuan, 030001, Shanxi, China.
Comprehensive Liver Cancer Center, The Fifth Medical Center of the PLA General Hospital, Beijing, 100039, China.
Sci Rep. 2023 Oct 13;13(1):17399. doi: 10.1038/s41598-023-43982-2.
Phosphofructokinase, platelet (PFKP) is a rate-limiting enzyme of glycolysis that plays a decisive role in various human physio-pathological processes. PFKP has been reported to have multiple functions in different cancer types, including lung cancer and breast cancer. However, no systematic pancancer analysis of PFKP has been performed; this type of analysis could elucidate the clinical value of PFKP in terms of diagnosis, prognosis, drug sensitivity, and immunological correlation. Systematic bioinformation analysis of PFKP was performed based on several public datasets, including The Cancer Genome Atlas (TCGA), Cancer Cell Line Encyclopedia (CCLE), Genotype-Tissue Expression Project (GTEx), and Human Protein Atlas (HPA). Prospective carcinogenesis of PFKP across cancers was estimated by expression analysis, effect on patient prognosis, diagnosis significance evaluation, and immunity regulation estimation. Then, pancancer functional enrichment of PFKP was also assessed through its effect on the signaling score and gene expression profile. Finally, upstream expression regulation of PFKP was explored by promoter DNA methylation and transcription factor (TF) prediction. Our analysis revealed that high expression of PFKP was found in most cancer types. Additionally, a high level of PFKP displayed a significant correlation with poor prognosis in patients across cancers. The diagnostic value of PFKP was performed based on its positive correlation with programmed cell death-ligand 1 (PD-L1). We also found an obvious immune-regulating effect of PFKP in most cancer types. PFKP also had a strong negative correlation with several cancer drugs. Finally, ectopic expression of PFKP may depend on DNA methylation and several predicated transcription factors, including the KLF (KLF transcription factor) and Sp (Sp transcription factor) families. This pancancer analysis revealed that a high expression level of PFKP might be a useful biomarker and predictor in most cancer types. Additionally, the performance of PFKP across cancers also suggested its meaningful role in cancer immunity regulation, even in immunotherapy and drug resistance. Overall, PFKP might be explored as an auxiliary monitor for pancancer early prognosis and diagnosis.
磷酸果糖激酶,血小板(PFKP)是糖酵解的限速酶,在各种人体生理病理过程中起着决定性作用。已经有报道称,PFKP 在多种癌症类型中具有多种功能,包括肺癌和乳腺癌。然而,尚未对 PFKP 进行系统的泛癌症分析;这种分析可以阐明 PFKP 在诊断、预后、药物敏感性和免疫相关性方面的临床价值。基于多个公共数据集,包括癌症基因组图谱(TCGA)、癌症细胞系百科全书(CCLE)、基因型组织表达项目(GTEx)和人类蛋白质图谱(HPA),对 PFKP 进行了系统的生物信息学分析。通过表达分析、对患者预后的影响、诊断意义评估和免疫调节评估,估计 PFKP 在癌症中的预期致癌作用。然后,还通过信号评分和基因表达谱评估 PFKP 的泛癌功能富集。最后,通过启动子 DNA 甲基化和转录因子(TF)预测探索 PFKP 的上游表达调控。我们的分析表明,PFKP 在大多数癌症类型中表达较高。此外,在跨癌症患者中,高水平的 PFKP 与预后不良显著相关。PFKP 的诊断价值基于其与程序性细胞死亡配体 1(PD-L1)的正相关关系。我们还发现 PFKP 在大多数癌症类型中具有明显的免疫调节作用。PFKP 还与几种癌症药物呈明显负相关。最后,PFKP 的异位表达可能依赖于 DNA 甲基化和几个预测的转录因子,包括 KLF(KLF 转录因子)和 Sp(Sp 转录因子)家族。这项泛癌症分析表明,PFKP 的高表达水平在大多数癌症类型中可能是一种有用的生物标志物和预测因子。此外,PFKP 在跨癌症中的表现也表明其在癌症免疫调节中的重要作用,甚至在免疫治疗和耐药性方面。总的来说,PFKP 可能被探索为泛癌早期预后和诊断的辅助监测器。