Department of Environmental, Biological and Pharmaceutical Sciences and Technologies (DiSTABiF), University of Campania 'Luigi Vanvitelli', Via Vivaldi 43, 81100 Caserta, Italy.
Institute of Crystallography, National Research Council, Via Vivaldi 43, 81100 Caserta, Italy.
Int J Mol Sci. 2023 Sep 22;24(19):14435. doi: 10.3390/ijms241914435.
Ribotoxin-like proteins (RL-Ps) are specific ribonucleases found in mushrooms that are able to cleave a single phosphodiester bond located in the sarcin-ricin loop (SRL) of the large rRNA. The cleaved SRL interacts differently with some ribosomal proteins (P-stalk). This action blocks protein synthesis because the damaged ribosomes are unable to interact with elongation factors. Here, the amino acid sequences of eryngitin 3 and 4, RL-Ps isolated from fruiting bodies, were determined to (i) obtain structural information on this specific ribonuclease family from edible mushrooms and (ii) explore the structural determinants which justify their different biological and antipathogenic activities. Indeed, eryngitin 3 exhibited higher toxicity with respect to eryngitin 4 against tumoral cell lines and model fungi. Structurally, eryngitin 3 and 4 consist of 132 amino acids, most of them identical and exhibiting a single free cysteinyl residue. The amino acidic differences between the two toxins are (i) an additional phenylalanyl residue at the N-terminus of eryngitin 3, not retrieved in eryngitin 4, and (ii) an additional arginyl residue at the C-terminus of eryngitin 4, not retrieved in eryngitin 3. The 3D models of eryngitins show slight differences at the N- and C-terminal regions. In particular, the positive electrostatic surface at the C-terminal of eryngitin 4 is due to the additional arginyl residue not retrieved in eryngitin 3. This additional positive charge could interfere with the binding to the SRL (substrate) or with some ribosomal proteins (P-stalk structure) during substrate recognition.
核糖体毒素样蛋白 (RL-P) 是存在于蘑菇中的一种特异性核酶,能够切割大 rRNA 中的 sarcin-ricin 环 (SRL) 中的单个磷酸二酯键。被切割的 SRL 与一些核糖体蛋白 (P-茎) 以不同的方式相互作用。这种作用会阻止蛋白质合成,因为受损的核糖体无法与延伸因子相互作用。在这里,从子实体中分离出的 RL-P eryngitin3 和 4 的氨基酸序列被确定为:(i) 从可食用蘑菇中获得这种特定核酶家族的结构信息;(ii) 探讨结构决定因素,证明其具有不同的生物学和抗病原体活性。事实上,eryngitin 3 对肿瘤细胞系和模型真菌的毒性比对 eryngitin 4 更高。结构上,eryngitin 3 和 4 由 132 个氨基酸组成,其中大部分相同,并且含有一个游离的半胱氨酸残基。两种毒素之间的氨基酸差异为:(i) eryngitin 3 的 N 末端有一个额外的苯丙氨酸残基,而 eryngitin 4 中没有;(ii) eryngitin 4 的 C 末端有一个额外的精氨酸残基,而 eryngitin 3 中没有。eryngitins 的 3D 模型在 N 和 C 末端区域有细微差异。特别是,eryngitin 4 的 C 末端的正静电表面是由于额外的精氨酸残基,而 eryngitin 3 中没有。这种额外的正电荷可能会干扰与 SRL(底物)的结合,或在底物识别过程中与某些核糖体蛋白(P-茎结构)的结合。