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额颞叶痴呆潜在生物标志物分析:生物信息学方法。

Analysis of Potential Biomarkers in Frontal Temporal Dementia: A Bioinformatics Approach.

机构信息

Department of Engineering Technology, University of Houston, Sugar Land, TX 77479, USA.

出版信息

Int J Mol Sci. 2023 Oct 5;24(19):14910. doi: 10.3390/ijms241914910.

Abstract

Frontal temporal dementia (FTD) is a neurological disorder known to have fewer therapeutic options. So far, only a few biomarkers are available for FTD that can be used as potential comorbidity targets. For example, genes such as , which has a role in breast cancer, and , which has a role in COVID-19, are known to show a role in FTD as well. To this end, in the present study, we aim to identify potential biomarkers or susceptible genes for FTD that show comorbidities with diseases such as COVID-19 and breast cancer. A dataset from Gene Expression Omnibus containing FTD expression profiles from African American and white ethnicity backgrounds was included in our study. In FTD samples of the GSE193391 dataset, we identified 305 DEGs, with 168 genes being up-regulated and 137 genes being down-regulated. We conducted a comorbidity analysis for COVID-19 and breast cancer, followed by an analysis of potential drug interactions, pathogenicity, analysis of genetic variants, and functional enrichment analysis. Our results showed that the genes , , , , and have significant transcriptomic alterations in FTD along with the comorbidity status with COVID-19 and breast cancer. Functional pathway analysis revealed that these comorbid genes were significantly enriched in the pathways such as glioma, JAK/STAT signaling, systematic lupus erythematosus, neurodegeneration-multiple diseases, and neuroactive ligand-receptor interaction. Overall, from these results, we concluded that these genes could be recommended as potential therapeutic targets for the treatment of comorbidities (breast cancer and COVID-19) in patients with FTD.

摘要

额颞叶痴呆(FTD)是一种神经退行性疾病,已知其治疗选择较少。到目前为止,只有少数生物标志物可用于 FTD,可作为潜在的共病靶点。例如,已知在乳腺癌中起作用的基因 和在 COVID-19 中起作用的基因 在 FTD 中也起作用。为此,在本研究中,我们旨在确定与 COVID-19 和乳腺癌等疾病有共病关系的 FTD 的潜在生物标志物或易感基因。我们的研究纳入了一个包含非裔美国人和白人种族背景 FTD 表达谱的基因表达综合数据库(Gene Expression Omnibus)数据集。在 GSE193391 数据集的 FTD 样本中,我们鉴定出 305 个差异表达基因,其中 168 个基因上调,137 个基因下调。我们对 COVID-19 和乳腺癌进行了共病分析,然后分析了潜在的药物相互作用、致病性、遗传变异分析和功能富集分析。结果表明,在 FTD 中,基因 、 、 、 和 与 COVID-19 和乳腺癌的共病状态一起发生显著的转录组改变。功能途径分析表明,这些共病基因在神经胶质瘤、JAK/STAT 信号、系统性红斑狼疮、神经退行性多疾病和神经活性配体-受体相互作用等途径中显著富集。总的来说,从这些结果中,我们得出结论,这些基因可以被推荐为 FTD 患者治疗共病(乳腺癌和 COVID-19)的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee43/10573524/9033ec1eb606/ijms-24-14910-g001.jpg

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