UMR 7019 LPCT, Université de Lorraine and CNRS, F-54000 Nancy, France.
Int J Mol Sci. 2023 Oct 9;24(19):15022. doi: 10.3390/ijms241915022.
S-glutathionylation is an oxidative post-translational modification, which is involved in the regulation of many cell signaling pathways. Increasing amounts of studies show that it is crucial in cell homeostasis and deregulated in several pathologies. However, the effect of S-glutathionylation on proteins' structure and activity is poorly understood, and a drastic lack of structural information at the atomic scale remains. Studies based on the use of molecular dynamics simulations, which can provide important information about modification-induced modulation of proteins' structure and function, are also sparse, and there is no benchmarked force field parameters for this modified cysteine. In this contribution, we provide robust AMBER parameters for S-glutathionylation, which we tested extensively against experimental data through a total of 33 μs molecular dynamics simulations. We show that our parameter set efficiently describes the global and local structural properties of S-glutathionylated proteins. These data provide the community with an important tool to foster new investigations into the effect of S-glutathionylation on protein dynamics and function, in a common effort to unravel the structural mechanisms underlying its critical role in cellular processes.
S-谷胱甘肽化是一种氧化的翻译后修饰,参与许多细胞信号通路的调节。越来越多的研究表明,它在细胞内稳态中至关重要,并且在几种病理状态下失调。然而,S-谷胱甘肽化对蛋白质结构和活性的影响还知之甚少,在原子尺度上仍然缺乏结构信息。基于使用分子动力学模拟的研究也很少,这些模拟可以提供关于修饰诱导的蛋白质结构和功能调节的重要信息,而且针对这种修饰半胱氨酸,也没有经过基准测试的力场参数。在本研究中,我们提供了针对 S-谷胱甘肽化的稳健的 AMBER 参数,我们通过总共 33 μs 的分子动力学模拟对其进行了广泛的实验数据测试。我们表明,我们的参数集有效地描述了 S-谷胱甘肽化蛋白的整体和局部结构特性。这些数据为研究 S-谷胱甘肽化对蛋白质动力学和功能的影响提供了一个重要工具,共同努力揭示其在细胞过程中关键作用的结构机制。