Suppr超能文献

持久路径拉普拉斯算子

PERSISTENT PATH LAPLACIAN.

作者信息

Wang Rui, Wei Guo-Wei

机构信息

Department of Mathematics, Michigan State University, MI 48824, USA.

Department of Electrical and Computer Engineering, Michigan State University, MI 48824, USA.

出版信息

Found Data Sci. 2023 Mar;5(1):26-55. doi: 10.3934/fods.2022015.

Abstract

Path homology proposed by S.-T.Yau and his co-workers provides a new mathematical model for directed graphs and networks. Persistent path homology (PPH) extends the path homology with filtration to deal with asymmetry structures. However, PPH is constrained to purely topological persistence and cannot track the homotopic shape evolution of data during filtration. To overcome the limitation of PPH, persistent path Laplacian (PPL) is introduced to capture the shape evolution of data. PPL's harmonic spectra fully recover PPH's topological persistence and its non-harmonic spectra reveal the homotopic shape evolution of data during filtration.

摘要

丘成桐及其同事提出的路径同调为有向图和网络提供了一种新的数学模型。持久路径同调(PPH)通过过滤扩展了路径同调,以处理不对称结构。然而,PPH仅限于纯粹的拓扑持久性,无法跟踪过滤过程中数据的同伦形状演变。为了克服PPH的局限性,引入了持久路径拉普拉斯算子(PPL)来捕捉数据的形状演变。PPL的调和谱完全恢复了PPH的拓扑持久性,其非调和谱揭示了过滤过程中数据的同伦形状演变。

相似文献

1
PERSISTENT PATH LAPLACIAN.
Found Data Sci. 2023 Mar;5(1):26-55. doi: 10.3934/fods.2022015.
2
Persistent spectral graph.
Int J Numer Method Biomed Eng. 2020 Sep;36(9):e3376. doi: 10.1002/cnm.3376. Epub 2020 Aug 17.
3
PERSISTENT HYPERDIGRAPH HOMOLOGY AND PERSISTENT HYPERDIGRAPH LAPLACIANS.
Found Data Sci. 2023 Dec;5(4):558-588. doi: 10.3934/fods.2023010.
4
HERMES: PERSISTENT SPECTRAL GRAPH SOFTWARE.
Found Data Sci. 2021 Mar;3(1):67-97. doi: 10.3934/fods.2021006.
5
Persistent spectral theory-guided protein engineering.
Nat Comput Sci. 2023 Feb;3(2):149-163. doi: 10.1038/s43588-022-00394-y. Epub 2023 Feb 20.
6
HOMOTOPY CONTINUATION FOR THE SPECTRA OF PERSISTENT LAPLACIANS.
Found Data Sci. 2021 Dec;3(4):677-700. doi: 10.3934/fods.2021017.
7
Laplacian Spectra of Persistent Structures in Taiwan, Singapore, and US Stock Markets.
Entropy (Basel). 2023 May 25;25(6):846. doi: 10.3390/e25060846.
8
Persistent homology of complex networks for dynamic state detection.
Phys Rev E. 2019 Aug;100(2-1):022314. doi: 10.1103/PhysRevE.100.022314.
9
Object-oriented Persistent Homology.
J Comput Phys. 2016 Jan 15;305:276-299. doi: 10.1016/j.jcp.2015.10.036.
10
Persistent homology in graph power filtrations.
R Soc Open Sci. 2016 Oct 26;3(10):160228. doi: 10.1098/rsos.160228. eCollection 2016 Oct.

引用本文的文献

1
A review of transformer models in drug discovery and beyond.
J Pharm Anal. 2025 Jun;15(6):101081. doi: 10.1016/j.jpha.2024.101081. Epub 2024 Aug 30.
2
Dirac-equation signal processing: Physics boosts topological machine learning.
PNAS Nexus. 2025 May 2;4(5):pgaf139. doi: 10.1093/pnasnexus/pgaf139. eCollection 2025 May.
3
Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for Protein-Ligand Binding Affinity Prediction.
J Chem Theory Comput. 2025 Apr 22;21(8):4276-4285. doi: 10.1021/acs.jctc.5c00074. Epub 2025 Apr 5.
4
PERSISTENT DIRAC OF PATHS ON DIGRAPHS AND HYPERGRAPHS.
Found Data Sci. 2024 Jun;6(2):124-153. doi: 10.3934/fods.2024001.
5
Persistent Mayer Dirac.
J Phys Complex. 2024 Dec 1;5(4):045005. doi: 10.1088/2632-072X/ad83a5. Epub 2024 Oct 17.
6
CHATGPT FOR COMPUTATIONAL TOPOLOGY.
Found Data Sci. 2024 Jun;6(2):221-250. doi: 10.3934/fods.2024009.
7
PERSISTENT HYPERDIGRAPH HOMOLOGY AND PERSISTENT HYPERDIGRAPH LAPLACIANS.
Found Data Sci. 2023 Dec;5(4):558-588. doi: 10.3934/fods.2023010.
8
Preventing future zoonosis: SARS-CoV-2 mutations enhance human-animal cross-transmission.
Comput Biol Med. 2024 Nov;182:109101. doi: 10.1016/j.compbiomed.2024.109101. Epub 2024 Sep 6.
9
Analyzing Single Cell RNA Sequencing with Topological Nonnegative Matrix Factorization.
J Comput Appl Math. 2024 Aug 1;445. doi: 10.1016/j.cam.2024.115842. Epub 2024 Feb 19.
10
Persistent topological Laplacian analysis of SARS-CoV-2 variants.
J Comput Biophys Chem. 2023 Aug;22(5):569-587. doi: 10.1142/s2737416523500278. Epub 2023 Jun 8.

本文引用的文献

1
ASPECTS OF TOPOLOGICAL APPROACHES FOR DATA SCIENCE.
Found Data Sci. 2022 Jun;4(2):165-216. doi: 10.3934/fods.2022002.
2
Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants.
Comput Biol Med. 2022 Dec;151(Pt A):106262. doi: 10.1016/j.compbiomed.2022.106262. Epub 2022 Nov 2.
3
Hodge theory-based biomolecular data analysis.
Sci Rep. 2022 Jun 11;12(1):9699. doi: 10.1038/s41598-022-12877-z.
4
EVOLUTIONARY DE RHAM-HODGE METHOD.
Discrete Continuous Dyn Syst Ser B. 2021 Jul;26(7):3785-3821. doi: 10.3934/dcdsb.2020257.
5
HERMES: PERSISTENT SPECTRAL GRAPH SOFTWARE.
Found Data Sci. 2021 Mar;3(1):67-97. doi: 10.3934/fods.2021006.
6
Persistent spectral-based machine learning (PerSpect ML) for protein-ligand binding affinity prediction.
Sci Adv. 2021 May 7;7(19). doi: 10.1126/sciadv.abc5329. Print 2021 May.
7
The de Rham-Hodge Analysis and Modeling of Biomolecules.
Bull Math Biol. 2020 Aug 8;82(8):108. doi: 10.1007/s11538-020-00783-2.
9
Persistent spectral graph.
Int J Numer Method Biomed Eng. 2020 Sep;36(9):e3376. doi: 10.1002/cnm.3376. Epub 2020 Aug 17.
10
Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges.
J Comput Aided Mol Des. 2019 Jan;33(1):71-82. doi: 10.1007/s10822-018-0146-6. Epub 2018 Aug 16.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验