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基于光热红外光谱的原核单细胞的域水平鉴定。

Domain-level Identification of Single Prokaryotic Cells by Optical Photothermal Infrared Spectroscopy.

机构信息

Super-cutting-edge Grand and Advanced Research (Sugar) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

Laboratory of Marine Environmental Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University.

出版信息

Microbes Environ. 2023;38(4). doi: 10.1264/jsme2.ME23052.

DOI:10.1264/jsme2.ME23052
PMID:37853632
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10728636/
Abstract

Infrared spectroscopy is used for the chemical characterization of prokaryotes. However, its application has been limited to cell aggregates and lipid extracts because of the relatively low spatial resolution of diffraction. We herein report optical photothermal infrared (O-PTIR) spectroscopy of prokaryotes for a domain-level diagnosis at the single-cell level. The technique provided infrared spectra of individual bacterial as well as archaeal cells, and the resulting aliphatic CH/CH intensity ratios showed domain-specific signatures, which may reflect distinctive cellular lipid compositions; however, there was interference by other cellular components. These results suggest the potential of O-PTIR for a domain-level diagnosis of single prokaryotic cells in natural environments.

摘要

红外光谱用于原核生物的化学特征分析。然而,由于其衍射的空间分辨率相对较低,该技术的应用一直局限于细胞聚集体和脂类提取物。在此,我们报告了用于单细胞水平的域级诊断的光学光热红外(O-PTIR)光谱技术。该技术提供了单个细菌和古细菌细胞的红外光谱,所得的脂肪族 CH/CH 强度比表现出具有特征的域特异性,这可能反映了独特的细胞脂质组成;然而,其他细胞成分也会产生干扰。这些结果表明 O-PTIR 有可能用于对自然环境中单一个原核细胞进行域级诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/196b47c059b1/38_23052-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/3cd0f997ca7d/38_23052-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/9e6023b603ef/38_23052-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/196b47c059b1/38_23052-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/3cd0f997ca7d/38_23052-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/9e6023b603ef/38_23052-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/41e1/10728636/196b47c059b1/38_23052-g003.jpg

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本文引用的文献

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Microbes Environ. 2023;38(1). doi: 10.1264/jsme2.ME22102.
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High abundance of hydrocarbon-degrading Alcanivorax in plumes of hydrothermally active volcanoes in the South Pacific Ocean.在南太平洋的热液活动火山羽流中,烃类降解菌 Alcanivorax 的丰度很高。
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Identification of 146 Metagenome-assembled Genomes from the Rumen Microbiome of Cattle in Japan.
从日本牛瘤胃微生物组中鉴定出 146 个宏基因组组装基因组。
Microbes Environ. 2022;37(4). doi: 10.1264/jsme2.ME22039.
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Metagenome-assembled Genomes of Six Novel Ammonia-oxidizing Archaea (AOA) from Agricultural Upland Soil.农业旱地土壤中六种新型氨氧化古菌(AOA)的宏基因组组装基因组。
Microbes Environ. 2022;37(3). doi: 10.1264/jsme2.ME22035.
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Simultaneous Raman and infrared spectroscopy: a novel combination for studying bacterial infections at the single cell level.同步拉曼光谱和红外光谱:一种用于在单细胞水平研究细菌感染的新型组合。
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Microbes Environ. 2022;37(3). doi: 10.1264/jsme2.ME22017.
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The role of Nucleic Acid Mimics (NAMs) on FISH-based techniques and applications for microbial detection.核酸模拟物(NAMs)在基于荧光原位杂交(FISH)的微生物检测技术及应用中的作用。
Microbiol Res. 2022 Sep;262:127086. doi: 10.1016/j.micres.2022.127086. Epub 2022 Jun 9.
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Sci Rep. 2022 May 19;12(1):8470. doi: 10.1038/s41598-022-12037-3.
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Microbiome. 2022 May 12;10(1):76. doi: 10.1186/s40168-022-01272-5.
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