PHIM, Univ Montpellier, INRAE, CIRAD, IRD, Institut Agro, Montpellier 34398, France.
Department of Entomology, University of Wisconsin, Wisconsin 53706, Madison.
Proc Natl Acad Sci U S A. 2023 Nov 28;120(48):e2309412120. doi: 10.1073/pnas.2309412120. Epub 2023 Nov 20.
Bunyaviruses are enveloped negative or ambisense single-stranded RNA viruses with a genome divided into several segments. The canonical view depicts each viral particle packaging one copy of each genomic segment in one polarity named the viral strand. Several opposing observations revealed nonequal ratios of the segments, uneven number of segments per virion, and even packaging of viral complementary strands. Unfortunately, these observations result from studies often addressing other questions, on distinct viral species, and not using accurate quantitative methods. Hence, what RNA segments and strands are packaged as the genome of any bunyavirus remains largely ambiguous. We addressed this issue by first investigating the virion size distribution and RNA content in populations of the tomato spotted wilt virus (TSWV) using microscopy and tomography. These revealed heterogeneity in viral particle volume and amount of RNA content, with a surprising lack of correlation between the two. Then, the ratios of all genomic segments and strands were established using RNA sequencing and qRT-PCR. Within virions, both plus and minus strands (but no mRNA) are packaged for each of the three L, M, and S segments, in reproducible nonequimolar proportions determined by those in total cell extracts. These results show that virions differ in their genomic content but together build up a highly reproducible genetic composition of the viral population. This resembles the genome formula described for multipartite viruses, with which some species of the order may share some aspects of the way of life, particularly emerging properties at a supravirion scale.
布尼亚病毒是有包膜的负单链或双义单链 RNA 病毒,基因组分为几个片段。经典观点认为,每个病毒粒子以一种极性(称为病毒链)包装每个基因组片段的一个拷贝。一些相反的观察结果显示,各片段之间的比例不均等,每个病毒粒子的片段数量不均等,甚至互补链也存在包装。不幸的是,这些观察结果来自于通常针对其他问题、不同病毒种属的研究,并且没有使用准确的定量方法。因此,任何布尼亚病毒的基因组中究竟包装了哪些 RNA 片段和链,在很大程度上仍然不清楚。我们通过首先使用显微镜和断层扫描技术研究番茄斑萎病毒(TSWV)群体中病毒粒子的大小分布和 RNA 含量来解决这个问题。这些结果显示了病毒粒子体积和 RNA 含量的异质性,两者之间出人意料地没有相关性。然后,我们使用 RNA 测序和 qRT-PCR 确定了所有基因组片段和链的比例。在病毒粒子内,L、M 和 S 三个片段的每条链(但无 mRNA)都以正负链形式包装,其比例在总细胞提取物中以可重复的非等摩尔比例确定。这些结果表明,病毒粒子在其基因组含量上存在差异,但它们共同构成了病毒群体高度可重复的遗传组成。这类似于多分段病毒的基因组公式,其中一些科的某些种属可能共享一些生活方式方面的特征,特别是在超病毒粒子尺度上的新兴特性。