Department of Biophysics, University of Michigan, Ann Arbor, MI, USA.
Department of Pharmacology and Cancer Biology, Duke University, Durham, NC, USA.
Nat Ecol Evol. 2024 Jan;8(1):147-162. doi: 10.1038/s41559-023-02255-x. Epub 2023 Nov 27.
Cancers with acquired resistance to targeted therapy can become simultaneously dependent on the presence of the targeted therapy drug for survival, suggesting that intermittent therapy may slow resistance. However, relatively little is known about which tumours are likely to become dependent and how to schedule intermittent therapy optimally. Here we characterized drug dependence across a panel of over 75 MAPK-inhibitor-resistant BRAF mutant melanoma models at the population and single-clone levels. Melanocytic differentiated models exhibited a much greater tendency to give rise to drug-dependent progeny than their dedifferentiated counterparts. Mechanistically, acquired loss of microphthalmia-associated transcription factor in differentiated melanoma models drives ERK-JunB-p21 signalling to enforce drug dependence. We identified the optimal scheduling of 'drug holidays' using simple mathematical models that we validated across short and long timescales. Without detailed knowledge of tumour characteristics, we found that a simple adaptive therapy protocol can produce near-optimal outcomes using only measurements of total population size. Finally, a spatial agent-based model showed that optimal schedules derived from exponentially growing cells in culture remain nearly optimal in the context of tumour cell turnover and limited environmental carrying capacity. These findings may guide the implementation of improved evolution-inspired treatment strategies for drug-dependent cancers.
具有获得性靶向治疗耐药性的癌症可能会同时依赖靶向治疗药物才能存活,这表明间歇性治疗可能会减缓耐药性的发展。然而,关于哪些肿瘤可能会产生依赖性以及如何最佳地安排间歇性治疗,我们目前知之甚少。在这里,我们在超过 75 种 MAPK 抑制剂耐药性 BRAF 突变黑色素瘤模型的群体和单细胞水平上对药物依赖性进行了表征。与去分化的对应物相比,黑素细胞分化模型更有可能产生依赖药物的后代。从机制上讲,在分化的黑色素瘤模型中获得性缺失小眼畸形相关转录因子驱动 ERK-JunB-p21 信号传导以强制产生药物依赖性。我们使用简单的数学模型确定了“药物假期”的最佳安排,并在短时间和长时间尺度上进行了验证。在没有详细了解肿瘤特征的情况下,我们发现,仅使用总群体大小的测量值,简单的自适应治疗方案就可以产生近乎最佳的结果。最后,基于空间的基于代理的模型表明,从培养中的指数增长细胞中得出的最佳方案在肿瘤细胞更新和有限的环境承载能力的情况下仍然接近最佳。这些发现可能为实施改进的基于进化的依赖药物的癌症治疗策略提供指导。