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利用计算机模拟方法开发针对铜绿假单胞菌的新型多表位 mRNA 疫苗。

Development of innovative multi-epitope mRNA vaccine against Pseudomonas aeruginosa using in silico approaches.

机构信息

Students Research Committee, Ilam University of Medical Sciences, Ilam, Iran.

Department of Microbiology, Faculty of Medicine, Ilam University of Medical Sciences, Ilam, Iran.

出版信息

Brief Bioinform. 2023 Nov 22;25(1). doi: 10.1093/bib/bbad502.

Abstract

The rising issue of antibiotic resistance has made treating Pseudomonas aeruginosa infections increasingly challenging. Therefore, vaccines have emerged as a viable alternative to antibiotics for preventing P. aeruginosa infections in susceptible individuals. With its superior accuracy, high efficiency in stimulating cellular and humoral immune responses, and low cost, mRNA vaccine technology is quickly replacing traditional methods. This study aimed to design a novel mRNA vaccine by using in silico approaches against P. aeruginosa. The research team identified five surface and antigenic proteins and selected their appropriate epitopes with immunoinformatic tools. These epitopes were then examined for toxicity, allergenicity and homology. The researchers also checked their presentation and identification by major histocompatibility complex cells and other immune cells through valuable tools like molecular docking. They subsequently modeled a multi-epitope protein and optimized it. The mRNA was analyzed in terms of structure and stability, after which the immune system's response against the new vaccine was simulated. The results indicated that the designed mRNA construct could be an effective and promising vaccine that requires laboratory and clinical trials.

摘要

抗生素耐药性问题日益严重,使得治疗铜绿假单胞菌感染变得愈发具有挑战性。因此,疫苗已成为预防易感人群铜绿假单胞菌感染的一种可行的抗生素替代方法。mRNA 疫苗技术具有准确性高、能高效刺激细胞和体液免疫应答、成本低等优点,正在迅速取代传统方法。本研究旨在通过计算机模拟方法设计一种针对铜绿假单胞菌的新型 mRNA 疫苗。研究团队使用免疫信息学工具鉴定了 5 种表面和抗原性蛋白,并选择了它们合适的表位。然后,研究人员使用毒性、变应原性和同源性检测工具对这些表位进行了检测。研究人员还使用分子对接等有价值的工具检查了主要组织相容性复合体细胞和其他免疫细胞对这些表位的呈递和识别情况。随后,他们构建了一种多表位蛋白并对其进行了优化。分析了 mRNA 的结构和稳定性,然后模拟了免疫系统对新疫苗的反应。结果表明,设计的 mRNA 构建物可能是一种有效且有前途的疫苗,需要进行实验室和临床试验。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8eae/10772946/ab33221b648f/bbad502f1.jpg

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