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使用显微图像评估用于皮肤利什曼原虫寄生虫诊断的深度学习模型

Assessment of Deep Learning Models for Cutaneous Leishmania Parasite Diagnosis Using Microscopic Images.

作者信息

Abdelmula Ali Mansour, Mirzaei Omid, Güler Emrah, Süer Kaya

机构信息

Department of Microbiology and Clinical Microbiology, Faculty of Medicine, Near East University, North Cyprus, Mersin 10, Lefkoşa 99010, Turkey.

Department of Biomedical Engineering, Faculty of Engineering, Near East University, North Cyprus, Mersin 10, Lefkoşa 99010, Turkey.

出版信息

Diagnostics (Basel). 2023 Dec 20;14(1):12. doi: 10.3390/diagnostics14010012.

Abstract

Cutaneous leishmaniasis (CL) is a common illness that causes skin lesions, principally ulcerations, on exposed regions of the body. Although neglected tropical diseases (NTDs) are typically found in tropical areas, they have recently become more common along Africa's northern coast, particularly in Libya. The devastation of healthcare infrastructure during the 2011 war and the following conflicts, as well as governmental apathy, may be causal factors associated with this catastrophic event. The main objective of this study is to evaluate alternative diagnostic strategies for recognizing amastigotes of cutaneous leishmaniasis parasites at various stages using Convolutional Neural Networks (CNNs). The research is additionally aimed at testing different classification models employing a dataset of ultra-thin skin smear images of Leishmania parasite-infected people with cutaneous leishmaniasis. The pre-trained deep learning models including EfficientNetB0, DenseNet201, ResNet101, MobileNetv2, and Xception are used for the cutaneous leishmania parasite diagnosis task. To assess the models' effectiveness, we employed a five-fold cross-validation approach to guarantee the consistency of the models' outputs when applied to different portions of the full dataset. Following a thorough assessment and contrast of the various models, DenseNet-201 proved to be the most suitable choice. It attained a mean accuracy of 0.9914 along with outstanding results for sensitivity, specificity, positive predictive value, negative predictive value, F1-score, Matthew's correlation coefficient, and Cohen's Kappa coefficient. The DenseNet-201 model surpassed the other models based on a comprehensive evaluation of these key classification performance metrics.

摘要

皮肤利什曼病(CL)是一种常见疾病,会在身体暴露部位引起皮肤病变,主要是溃疡。尽管被忽视的热带病(NTDs)通常在热带地区出现,但最近在非洲北部海岸,特别是在利比亚,它们变得更加常见。2011年战争及后续冲突期间医疗基础设施的破坏,以及政府的冷漠,可能是与这一灾难性事件相关的因果因素。本研究的主要目的是评估使用卷积神经网络(CNN)识别不同阶段皮肤利什曼病寄生虫无鞭毛体的替代诊断策略。该研究还旨在使用皮肤利什曼病患者的利什曼原虫寄生虫超薄皮肤涂片图像数据集测试不同的分类模型。包括EfficientNetB0、DenseNet201、ResNet101、MobileNetv2和Xception在内的预训练深度学习模型用于皮肤利什曼原虫寄生虫诊断任务。为了评估模型的有效性,我们采用了五折交叉验证方法,以确保模型输出在应用于完整数据集的不同部分时的一致性。在对各种模型进行全面评估和对比后,DenseNet-201被证明是最合适的选择。它的平均准确率达到0.9914,在敏感性、特异性、阳性预测值、阴性预测值、F1分数、马修斯相关系数和科恩卡帕系数方面也取得了出色的结果。基于对这些关键分类性能指标的全面评估,DenseNet-201模型超越了其他模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0311/10802189/7a3d2eca668a/diagnostics-14-00012-g001.jpg

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