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利用机器学习方法对手机图像进行分析,实现血液涂片寄生虫的自动检测。

Automatic detection of the parasite in blood smears using a machine learning approach applied to mobile phone images.

机构信息

Hospital Israelita Albert Einstein, São Paulo, Brazil.

Scientific Platform Pasteur-University of São Paulo (SPPU), Universidade de São Paulo, Sao Paulo, SP, Brazil.

出版信息

PeerJ. 2022 May 27;10:e13470. doi: 10.7717/peerj.13470. eCollection 2022.

DOI:10.7717/peerj.13470
PMID:35651746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9150695/
Abstract

Chagas disease is a life-threatening illness caused by the parasite . The diagnosis of the acute form of the disease is performed by trained microscopists who detect parasites in blood smear samples. Since this method requires a dedicated high-resolution camera system attached to the microscope, the diagnostic method is more expensive and often prohibitive for low-income settings. Here, we present a machine learning approach based on a random forest (RF) algorithm for the detection and counting of trypomastigotes in mobile phone images. We analyzed micrographs of blood smear samples that were acquired using a mobile device camera capable of capturing images in a resolution of 12 megapixels. We extracted a set of features that describe morphometric parameters (geometry and curvature), as well as color, and texture measurements of 1,314 parasites. The features were divided into train and test sets (4:1) and classified using the RF algorithm. The values of precision, sensitivity, and area under the receiver operating characteristic (ROC) curve of the proposed method were 87.6%, 90.5%, and 0.942, respectively. Automating image analysis acquired with a mobile device is a viable alternative for reducing costs and gaining efficiency in the use of the optical microscope.

摘要

恰加斯病是一种由寄生虫引起的危及生命的疾病。急性形式的疾病诊断由训练有素的显微镜检查人员进行,他们在血涂片样本中检测寄生虫。由于这种方法需要专门的高分辨率相机系统连接到显微镜上,因此诊断方法更昂贵,而且对于低收入环境来说往往是不可行的。在这里,我们提出了一种基于随机森林 (RF) 算法的用于在手机图像中检测和计数锥虫的机器学习方法。我们分析了使用能够以 1200 万像素分辨率捕获图像的移动设备相机获取的血涂片样本的显微镜图像。我们提取了一组描述形态参数(几何形状和曲率)以及 1314 个寄生虫的颜色和纹理测量的特征。特征分为训练集和测试集(4:1),并使用 RF 算法进行分类。所提出方法的精度、敏感性和接收者操作特征(ROC)曲线下的面积值分别为 87.6%、90.5%和 0.942。使用移动设备自动进行图像分析是降低成本和提高光学显微镜使用效率的可行替代方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/be7521ddbb79/peerj-10-13470-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/1d630ba34e30/peerj-10-13470-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/7d9f9d7f77ce/peerj-10-13470-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/f3db14e9f943/peerj-10-13470-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/2c067c1e3272/peerj-10-13470-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/31d21f855f91/peerj-10-13470-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/be7521ddbb79/peerj-10-13470-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/1d630ba34e30/peerj-10-13470-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/7d9f9d7f77ce/peerj-10-13470-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/f3db14e9f943/peerj-10-13470-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/2c067c1e3272/peerj-10-13470-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/31d21f855f91/peerj-10-13470-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1309/9150695/be7521ddbb79/peerj-10-13470-g006.jpg

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