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基于脂肪酸氧化相关风险评分模型的胶质瘤预后基因及免疫景观特征的鉴定与验证

Identification and validation of prognostic genes and immune landscape signatures based on a fatty acid oxidation‑related risk score model in glioma.

作者信息

Guo Fangzhou, Ling Guoyuan, Zhai Zhenzhu, Lei Yi, Mo Ligen, Piao Haozhe

机构信息

Graduate School, The Second Affiliated Hospital, Dalian Medical University, Dalian, Liaoning 116000, P.R. China.

Department of Neurosurgery, Guangxi Medical University Cancer Hospital, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.

出版信息

Oncol Lett. 2024 Jan 5;27(2):88. doi: 10.3892/ol.2024.14222. eCollection 2024 Feb.

Abstract

Fatty acid oxidation (FAO) plays a crucial role in glioma metabolism and its interaction with the immune microenvironment. The aim of the present study was to investigate the relationship between FAO-related genes and glioma by constructing gene clusters using a glioma cohort. A total of 287 differentially expressed genes related to FAO were identified and the top 50 genes were selected based on their P-values. Subsequently, patients were classified into two distinct gene subtypes (A and B) based on these genes. Scores for each patient were calculated using the 50 genes and the patients were divided into the high and low-score groups accordingly. Patients in subtype B exhibited higher tumor grades and poor prognostic factors such as older age and worse survival rates. The high-score subgroup had unfavorable indicators, including isocitrate dehydrogenase 1 wild-type, high tumor grade and 1p19q non-codeleted, while immune checkpoint expression was generally higher in the high-score subgroup. The constructed scoring model was validated using an external dataset, and the tissue inhibitor of metalloproteinase 1 gene was identified through protein interaction analysis, suggesting its potential involvement in glioma malignancy and promotion of glioblastoma proliferation. In conclusion, FAO-related genes may contribute to tumor development through immune mechanisms and the present study may provide novel insights for potential therapeutic strategies in glioma treatment.

摘要

脂肪酸氧化(FAO)在胶质瘤代谢及其与免疫微环境的相互作用中起着关键作用。本研究的目的是通过使用胶质瘤队列构建基因簇来研究FAO相关基因与胶质瘤之间的关系。共鉴定出287个与FAO相关的差异表达基因,并根据P值选择了前50个基因。随后,根据这些基因将患者分为两种不同的基因亚型(A和B)。使用这50个基因计算每个患者的分数,并据此将患者分为高分和低分两组。B亚型患者表现出更高的肿瘤分级和不良预后因素,如年龄较大和生存率较差。高分亚组有不利指标,包括异柠檬酸脱氢酶1野生型、高肿瘤分级和1p19q未缺失,而高分亚组的免疫检查点表达通常较高。使用外部数据集验证了构建的评分模型,并通过蛋白质相互作用分析鉴定了金属蛋白酶组织抑制剂1基因,表明其可能参与胶质瘤的恶性进展并促进胶质母细胞瘤增殖。总之,FAO相关基因可能通过免疫机制促进肿瘤发展,本研究可能为胶质瘤治疗的潜在治疗策略提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1a65/10797317/5c57a922e929/ol-27-02-14222-g00.jpg

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