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[物种名称]中基因家族的全基因组生物信息学分析及候选基因的表达验证

Genome-Wide Bioinformatics Analysis of Gene Family and Expression Verification of Candidate Genes in .

作者信息

Iqbal Javed, Zhang Wuhua, Fan Yingdong, Dong Jie, Xie Yangyang, Li Ronghui, Yang Tao, Zhang Jinzhu, Che Daidi

机构信息

College of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin 150030, China.

Key Laboratory of Cold Region Landscape Plants and Applications, Harbin 150030, China.

出版信息

Plants (Basel). 2024 Jan 30;13(3):406. doi: 10.3390/plants13030406.

Abstract

Sugars act as the main energy sources in many fruit and vegetable crops. The biosynthesis and transportation of sugars are crucial and especially contribute to growth and development. is an important gene family that plays a vital role in plants' growth, development, and adaptation to various types of stresses (biotic and abiotic). Although genes have been identified in numerous plant species, there is no information on in . In the present study, we performed a comprehensive genome-wide bioinformatics analysis and identified a total of 23 candidate genes in the genome, which were randomly distributed on ten different chromosomes. The phylogenetic analysis, chromosomal location, gene structure, specific cis-elements, protein interaction network, and physiological characteristics of these genes were systematically examined. The identified results of the phylogenetic relationship with revealed that these genes were divided into four clades (I, II, III, and IV). Moreover, tissue-specific gene expression through quantitative real-time polymerase chain reaction (qRT-PCR) validation exposed that the identified were differentially expressed in various tissues (roots, stems, leaves, and flowers). Mainly, the relative fold gene expression in swollen and unswollen tubers effectively revealed that (7, 9, and 12) were highly expressed (300-, 120-, and 100-fold) in swollen tubers. To further elucidate the function of (7, 9, and 12), their subcellular location was confirmed by inserting them into tobacco leaves, and it was noted that these genes were present on the cell membrane. On the basis of the overall results, it is suggested that (7, 9, and 12) are the candidate genes involved in swollen tuber formation in . In crux, we speculated that our study provides a valuable theoretical base for further in-depth function analysis of the gene family and their role in tuber development and further enhancing the molecular breeding of

摘要

糖类是许多水果和蔬菜作物中的主要能量来源。糖类的生物合成和运输至关重要,尤其对生长和发育有重要作用。[具体基因家族名称]是一个重要的基因家族,在植物的生长、发育以及对各种胁迫(生物胁迫和非生物胁迫)的适应中发挥着至关重要的作用。尽管在许多植物物种中已经鉴定出了[具体基因家族名称]基因,但关于[目标物种名称]中的[具体基因家族名称]却没有相关信息。在本研究中,我们进行了全面的全基因组生物信息学分析,在[目标物种名称]基因组中总共鉴定出23个候选[具体基因家族名称]基因,它们随机分布在十条不同的染色体上。对这些基因的系统发育分析、染色体定位、基因结构、特定顺式元件、蛋白质相互作用网络和生理特征进行了系统研究。与[对比物种名称]的系统发育关系鉴定结果表明,这些[具体基因家族名称]基因分为四个进化枝(I、II、III和IV)。此外,通过定量实时聚合酶链反应(qRT-PCR)验证的组织特异性基因表达表明,鉴定出的[具体基因家族名称]基因在各种组织(根、茎、叶和花)中差异表达。主要地,在膨大与未膨大块茎中基因表达的相对倍数有效地揭示出,[具体基因编号7、9和12]在膨大的块茎中高表达(分别为300倍、120倍和100倍)。为了进一步阐明[具体基因编号7、9和12]的功能,通过将它们插入烟草叶片来确认其亚细胞定位,并且注意到这些基因存在于细胞膜上。基于总体结果,表明[具体基因编号7、9和12]是参与[目标物种名称]中块茎膨大形成的候选基因。关键在于,我们推测我们的研究为进一步深入分析[具体基因家族名称]基因家族的功能及其在块茎发育中的作用以及进一步加强[目标物种名称]的分子育种提供了有价值的理论基础

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/56a1/10856985/086859f06367/plants-13-00406-g001.jpg

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