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基因组流行病学揭示了与威尔士菌血症相关的多药耐药大肠杆菌 ST131 的地理聚集现象。

Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales.

机构信息

School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, 4072, Australia.

Australian Infectious Disease Research Centre, The University of Queensland, Brisbane, QLD, 4072, Australia.

出版信息

Nat Commun. 2024 Feb 14;15(1):1371. doi: 10.1038/s41467-024-45608-1.

Abstract

Antibiotic resistance is a significant global public health concern. Uropathogenic Escherichia coli sequence type (ST)131, a widely prevalent multidrug-resistant clone, is frequently associated with bacteraemia. This study investigates third-generation cephalosporin resistance in bloodstream infections caused by E. coli ST131. From 2013-2014 blood culture surveillance in Wales, 142 E. coli ST131 genomes were studied alongside global data. All three major ST131 clades were represented across Wales, with clade C/H30 predominant (n = 102/142, 71.8%). Consistent with global findings, Welsh strains of clade C/H30 contain β-lactamase genes from the bla group (n = 65/102, 63.7%), which confer resistance to third-generation cephalosporins. Most Welsh clade C/H30 genomes belonged to sub-clade C2/H30Rx (58.3%). A Wales-specific sub-lineage, named GB-WLS.C2, diverged around 1996-2000. An introduction to North Wales around 2002 led to a localised cluster by 2009, depicting limited genomic diversity within North Wales. This investigation emphasises the value of genomic epidemiology, allowing the detection of genetically similar strains in local areas, enabling targeted and timely public health interventions.

摘要

抗生素耐药性是一个重大的全球公共卫生关注问题。尿路致病性大肠杆菌序列型(ST)131 是一种广泛流行的多药耐药克隆,常与菌血症有关。本研究调查了由大肠杆菌 ST131 引起的血流感染中第三代头孢菌素的耐药性。在 2013-2014 年威尔士的血液培养监测中,研究了 142 株大肠杆菌 ST131 基因组以及全球数据。威尔士的三种主要 ST131 分支都有代表,分支 C/H30 占优势(n=102/142,71.8%)。与全球发现一致,分支 C/H30 的威尔士菌株含有 bla 组的β-内酰胺酶基因(n=65/102,63.7%),这导致对第三代头孢菌素的耐药性。大多数威尔士分支 C/H30 基因组属于子分支 C2/H30Rx(58.3%)。一个名为 GB-WLS.C2 的威尔士特有亚系于 1996-2000 年左右分化。大约在 2002 年引入北威尔士,导致 2009 年出现局部集群,表明北威尔士内部的基因组多样性有限。本研究强调了基因组流行病学的价值,它可以检测到局部地区遗传相似的菌株,从而能够进行有针对性和及时的公共卫生干预。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88c6/10866875/9192afae1c3b/41467_2024_45608_Fig1_HTML.jpg

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