• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

对从墨西哥米却肯州查罗第一地区医院一名感染 COVID-19 的患者身上分离出的一株菌株的基因组进行测序和描述。

Sequencing and description of the genome of a strain of isolated from a patient infected with COVID-19 at Hospital Regional No.1 de Charo, Michoacán, México.

作者信息

Flores-Alvarez Luis Jose, Martínez-Flores Irma, Bustos Patricia, Gómez-García Anel, Gutiérrez-Castellanos Sergio, Poot-Hernández Augusto César, Arredondo-Santoyo Marina

机构信息

Centro de Investigación Biomédica de Michoacán-IMSS. Morelia, Michoacán, México, Mexican Social Security Institute, Mexico City, Mexico City, Mexico.

Centro de Ciencias Genomicas, UNAM. Cuernavaca, Morelos, Universidad Nacional Autónoma de México, Mexico City, Mexico City, Mexico.

出版信息

MicroPubl Biol. 2024 Feb 12;2024. doi: 10.17912/micropub.biology.001051. eCollection 2024.

DOI:10.17912/micropub.biology.001051
PMID:38415072
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10897733/
Abstract

is a bacterial genus that can be found in various environments, such as water, soil, and clinical samples. Due to their high genetic and phenotypic diversity, it is difficult to properly identify and classify all isolates. The COVID-19 pandemic caused an increase in nosocomial infections, which played a major role in the high mortality rate among patients in intensive care. This is the first report of the identification of as a nosocomial opportunistic pathogen isolated from a patient with COVID-19. Their genome was isolated, sequenced, and assembled, and it consists of 4,488,090 bp in 24 contigs, 4,103 coding sequences, and a G+C content of 66.58%.

摘要

是一个细菌属，可在各种环境中发现，如水、土壤和临床样本中。由于它们具有高度的遗传和表型多样性，难以对所有分离株进行准确鉴定和分类。新冠疫情导致医院感染增加，这在重症监护患者的高死亡率中起了主要作用。这是首次报告从一名新冠患者中分离出作为医院机会性病原体。对其基因组进行了分离、测序和组装，它由24个重叠群中的4,488,090碱基对组成，有4,103个编码序列，G+C含量为66.58%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bc6/10897733/cf695c416af9/25789430-2024-micropub.biology.001051.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bc6/10897733/cf695c416af9/25789430-2024-micropub.biology.001051.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0bc6/10897733/cf695c416af9/25789430-2024-micropub.biology.001051.jpg

相似文献

1
Sequencing and description of the genome of a strain of isolated from a patient infected with COVID-19 at Hospital Regional No.1 de Charo, Michoacán, México.对从墨西哥米却肯州查罗第一地区医院一名感染 COVID-19 的患者身上分离出的一株菌株的基因组进行测序和描述。
MicroPubl Biol. 2024 Feb 12;2024. doi: 10.17912/micropub.biology.001051. eCollection 2024.
2
Draft genome sequence of a multidrug-resistant Stenotrophomonas sp. B1-1 strain isolated from radiation-polluted soil and its pathogenic potential.一株耐多药寡养单胞菌 B1-1 菌株的基因组草图，该菌从辐射污染土壤中分离得到，具有潜在的致病性。
J Glob Antimicrob Resist. 2021 Mar;24:121-123. doi: 10.1016/j.jgar.2020.12.014. Epub 2020 Dec 26.
3
Gene flow, recombination, and positive selection in Stenotrophomonas maltophilia: mechanisms underlying the diversity of the widespread opportunistic pathogen.嗜麦芽窄食单胞菌中的基因流动、重组及正选择：广泛存在的机会致病菌多样性背后的机制
Genome. 2016 Dec;59(12):1063-1075. doi: 10.1139/gen-2016-0073. Epub 2016 Aug 6.
4
Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis.生金链霉菌，从轮叶伯乐树叶斑病中分离得到的一种新型细菌。
Antonie Van Leeuwenhoek. 2020 Oct;113(10):1447-1454. doi: 10.1007/s10482-020-01453-y. Epub 2020 Aug 3.
5
Antibiotic resistance genes prediction via whole genome sequence analysis of Stenotrophomonas maltophilia.通过对嗜麦芽寡养单胞菌全基因组序列分析预测抗生素耐药基因。
J Infect Public Health. 2024 Feb;17(2):236-244. doi: 10.1016/j.jiph.2023.12.010. Epub 2023 Dec 16.
6
Phenotypic and Transcriptomic Analyses of Seven Clinical Stenotrophomonas maltophilia Isolates Identify a Small Set of Shared and Commonly Regulated Genes Involved in the Biofilm Lifestyle.临床嗜麦芽寡养单胞菌 7 株分离株的表型和转录组分析确定了一小部分共同调控的基因，这些基因参与生物膜生活方式。
Appl Environ Microbiol. 2020 Nov 24;86(24). doi: 10.1128/AEM.02038-20.
7
First Report of the Armillaria Root-Disease Pathogen, , Associated with Several Woody Hosts in Three States of Central Mexico (Guanajuato, Jalisco, and Michoacan).蜜环菌根病病原体与墨西哥中部三个州（瓜纳华托州、哈利斯科州和米却肯州）几种木本寄主相关的首次报道。
Plant Dis. 2020 Jul 28. doi: 10.1094/PDIS-06-20-1274-PDN.
8
Characterization of three strains isolated from different ecosystems and proposal of sp. nov. and sp. nov.从不同生态系统分离出的三株菌株的特性鉴定以及新种和新种的提议
Front Microbiol. 2022 Dec 15;13:1056762. doi: 10.3389/fmicb.2022.1056762. eCollection 2022.
9
complex: insights into evolutionary relationships, global distribution and pathogenicity.复杂的关系，全球分布和致病性。
Front Cell Infect Microbiol. 2024 Jan 10;13:1325379. doi: 10.3389/fcimb.2023.1325379. eCollection 2023.
10
The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strain . Pemsol isolated from Mexico.一种从墨西哥分离出的新型菌株Pemsol的多环芳烃（PAH）降解活性及基因组分析
PeerJ. 2020 Jan 6;8:e8102. doi: 10.7717/peerj.8102. eCollection 2020.

本文引用的文献

1
GTDB-Tk v2: memory friendly classification with the genome taxonomy database.GTDB-Tk v2：使用基因组分类数据库实现内存友好的分类。
Bioinformatics. 2022 Nov 30;38(23):5315-5316. doi: 10.1093/bioinformatics/btac672.
2
Isolation, Characterization, and Genomic Investigation of a Phytopathogenic Strain of .一株植物病原菌的分离、鉴定及基因组学研究。
Phytopathology. 2021 Nov;111(11):2088-2099. doi: 10.1094/PHYTO-11-20-0501-R. Epub 2021 Nov 11.
3
Ventilator-associated pneumonia in critically ill patients with COVID-19.COVID-19 重症患者呼吸机相关性肺炎。
Crit Care. 2021 Jan 11;25(1):25. doi: 10.1186/s13054-021-03460-5.
4
Nosocomial infections associated to COVID-19 in the intensive care unit: clinical characteristics and outcome.与 COVID-19 相关的医院感染：重症监护病房的临床特征和结局。
Eur J Clin Microbiol Infect Dis. 2021 Mar;40(3):495-502. doi: 10.1007/s10096-020-04142-w. Epub 2021 Jan 3.
5
Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study.实时预测和预报源自中国武汉的 2019-nCoV 疫情在国内和国际的潜在传播：一项建模研究。
Lancet. 2020 Feb 29;395(10225):689-697. doi: 10.1016/S0140-6736(20)30260-9. Epub 2020 Jan 31.
6
A Novel Coronavirus from Patients with Pneumonia in China, 2019.2019 年中国肺炎患者中的一种新型冠状病毒。
N Engl J Med. 2020 Feb 20;382(8):727-733. doi: 10.1056/NEJMoa2001017. Epub 2020 Jan 24.
7
Interactive Tree Of Life (iTOL) v4: recent updates and new developments.交互式生命树 (iTOL) v4：最新更新和新发展。
Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259. doi: 10.1093/nar/gkz239.
8
UFBoot2: Improving the Ultrafast Bootstrap Approximation.UFBoot2：改进超快bootstrap 逼近算法。
Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281.
9
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
10
Phenotypic and Genotypic Diversity during a 10-year Colonization in the Lungs of a Cystic Fibrosis Patient.囊性纤维化患者肺部10年定植过程中的表型和基因型多样性
Front Microbiol. 2016 Sep 30;7:1551. doi: 10.3389/fmicb.2016.01551. eCollection 2016.