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2
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3
Molecular Dynamics Simulation for All.分子动力学模拟概览。
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Engineering enhanced cellobiohydrolase activity.工程强化纤维二糖水解酶活性。
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9
Engineering Cel7A carbohydrate binding module and linker for reduced lignin inhibition.工程化Cel7A碳水化合物结合模块和连接子以减少木质素抑制作用。
Biotechnol Bioeng. 2016 Jun;113(6):1369-74. doi: 10.1002/bit.25889. Epub 2015 Dec 8.
10
Sequencing, biochemical characterization, crystal structure and molecular dynamics of cellobiohydrolase Cel7A from Geotrichum candidum 3C.内切-β-1,4-葡聚糖酶 Cel7A 来自产朊假丝酵母 3C 的测序、生化特性、晶体结构和分子动力学研究。
FEBS J. 2015 Dec;282(23):4515-37. doi: 10.1111/febs.13509. Epub 2015 Oct 8.

S-S 桥突变位于 Cel7A 的 A2 和 A4 环(T416C-I432C)之间,增强了催化活性和热稳定性。

The S-S bridge mutation between the A2 and A4 loops (T416C-I432C) of Cel7A of enhances catalytic activity and thermostability.

机构信息

Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, West Bengal, India.

出版信息

Appl Environ Microbiol. 2024 Apr 17;90(4):e0232923. doi: 10.1128/aem.02329-23. Epub 2024 Mar 5.

DOI:10.1128/aem.02329-23
PMID:38440989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11022540/
Abstract

Disulfide bonds are important for maintaining the structural conformation and stability of the protein. The introduction of the disulfide bond is a promising strategy to increase the thermostability of the protein. In this report, cysteine residues are introduced to form disulfide bonds in the Glycoside Hydrolase family GH 7 cellobiohydrolase (GH7 CBHs) or Cel7A of . Disulfide by Design 2.0 (DbD2), an online tool is used for the detection of the mutation sites. Mutations are created (D276C-G279C; DSB1, D322C-G327C; DSB2, T416C-I432C; DSB3, G460C-S465C; DSB4) inside and outside of the peripheral loops but, not in the catalytic region. The introduction of cysteine in the A2 and A4 loop of DSB3 mutant showed higher thermostability (70% activity at 70°C), higher substrate affinity (K = 0.081 mM) and higher catalytic activity (K = 9.75 min; K/K = 120.37 mM min) compared to wild-type Cel7A (50% activity at 70°C; K = 0.128 mM; K = 4.833 min; K/K = 37.75 mM min). The other three mutants with high B factor showed loss of thermostability and catalytic activity. Molecular dynamic simulations revealed that the mutation T416C-I432C makes the tunnel wider (DSB3: 13.6 Å; Wt: 5.3 Å) at the product exit site, giving flexibility in the entrance region or mobility of the substrate in the exit region. It may facilitate substrate entry into the catalytic tunnel and release the product faster than the wild type, whereas in other mutants, the tunnel is not prominent (DSB4), the exit is lost (DSB1), and the ligand binding site is absent (DSB2). This is the first report of the gain of function of both thermostability and enzyme activity of cellobiohydrolase Cel7A by disulfide bond engineering in the loop.IMPORTANCEBioethanol is one of the cleanest renewable energy and alternatives to fossil fuels. Cost efficient bioethanol production can be achieved through simultaneous saccharification and co-fermentation that needs active polysaccharide degrading enzymes. Cellulase enzyme complex is a crucial enzyme for second-generation bioethanol production from lignocellulosic biomass. Cellobiohydrolase (Cel7A) is an important member of this complex. In this work, we engineered (disulfide bond engineering) the Cel7A to increase its thermostability and catalytic activity which is required for its industrial application.

摘要

二硫键对于维持蛋白质的结构构象和稳定性很重要。引入二硫键是提高蛋白质热稳定性的一种很有前途的策略。在本报告中,通过使用在线工具 Disulfide by Design 2.0(DbD2),在糖苷水解酶家族 GH7 纤维二糖水解酶(GH7 CBHs)或 Cel7A 中引入半胱氨酸以形成二硫键。检测突变位点。在 A2 和 A4 环中引入半胱氨酸的 DSB3 突变体显示出更高的热稳定性(70°C 时活性为 70%)、更高的底物亲和力(K = 0.081 mM)和更高的催化活性(K = 9.75 min;K/K = 120.37 mM min)与野生型 Cel7A(70°C 时活性为 50%;K = 0.128 mM;K = 4.833 min;K/K = 37.75 mM min)相比。其他三个 B 因子较高的突变体显示出热稳定性和催化活性丧失。分子动力学模拟表明,突变 T416C-I432C 使产物出口处的隧道变宽(DSB3:13.6 Å;Wt:5.3 Å),在入口区域赋予了灵活性或出口区域中底物的迁移性。这可能有助于底物进入催化隧道并比野生型更快地释放产物,而在其他突变体中,隧道不明显(DSB4),出口丢失(DSB1),配体结合位点不存在(DSB2)。这是首次通过环中的二硫键工程报告获得纤维二糖水解酶 Cel7A 的热稳定性和酶活性的功能增益。

重要性
生物乙醇是最清洁的可再生能源之一,也是化石燃料的替代品。通过同时糖化和共发酵可以实现具有成本效益的生物乙醇生产,这需要活性多糖降解酶。纤维素酶酶复合物是从木质纤维素生物质生产第二代生物乙醇的关键酶。纤维二糖水解酶(Cel7A)是该复合物的重要成员。在这项工作中,我们通过(二硫键工程)对 Cel7A 进行了工程改造,以提高其热稳定性和催化活性,这是其工业应用所必需的。