Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Department of Environmental and Natural Resource Science, Tokyo University of Agriculture and Technology, Tokyo, Japan.
Appl Environ Microbiol. 2018 May 17;84(11). doi: 10.1128/AEM.00156-18. Print 2018 Jun 1.
Fungi secrete a set of glycoside hydrolases and oxidoreductases, including lytic polysaccharide monooxygenases (LPMOs), for the degradation of plant polysaccharides. LPMOs catalyze the oxidative cleavage of glycosidic bonds after activation by an external electron donor. So far, only flavin-dependent oxidoreductases (from the auxiliary activity [AA] family AA3) have been shown to activate LPMOs. Here, we present LPMO activation by a pyrroloquinoline-quinone (PQQ)-dependent pyranose dehydrogenase (PDH) from , PDH, the founding member of the recently discovered auxiliary activity family AA12. PDH contains a C-terminal family 1 carbohydrate binding module (CBM1), an N-terminal family AA8 cytochrome domain, and a central AA12 dehydrogenase domain. We have studied the ability of full-length PDH and its truncated variants to drive catalysis by two LPMOs. The results show that PDH indeed can activate the C-1-oxidizing LPMO 9F (LPMO9F) and the C-4-oxidizing LPMO 9C (LPMO9C), that this activation depends on the cytochrome domain, and that the dehydrogenase and the LPMO reactions are strongly coupled. The two tested PDH-LPMO systems showed quite different efficiencies, and this difference disappeared upon the addition of free PQQ acting as a diphenol/quinone redox mediator, showing that LPMOs differ when it comes to their direct interactions with the cytochrome domain. Surprisingly, removal of the CBM domain from PDH had a considerable negative impact on the efficiency of the PDH-LPMO systems, suggesting that electron transfer in the vicinity of the substrate is beneficial. PDH does not oxidize cello-oligosaccharides, which makes this enzyme a useful tool for studying cellulose-oxidizing LPMOs. Lytic polysaccharide monooxygenases (LPMOs) are currently receiving increasing attention because of their importance in degrading recalcitrant polysaccharides and their potential roles in biological processes, such as bacterial virulence. LPMO action requires an external electron donor, and fungi growing on biomass secrete various so-called glucose-methanol-choline (GMC) oxidoreductases, including cellobiose dehydrogenase, which can donate electrons to LPMOs. This paper describes how an enzyme not belonging to the GMC oxidoreductase family, PDH, can activate LPMOs, and it provides new insights into the activation process by (i) describing the roles of individual PDH domains (a dehydrogenase, a cytochrome, and a carbohydrate-binding domain), (ii) showing that the PDH and LPMO enzyme reactions are strongly coupled, (iii) demonstrating that LPMOs differ in terms of their efficiencies of activation by the same activator, and (iv) providing indications that electron transferring close to the substrate surface is beneficial for the overall efficiency of the PDH-LPMO system.
真菌分泌了一组糖苷水解酶和氧化还原酶,包括溶细胞多糖单加氧酶(LPMO),用于降解植物多糖。LPMO 通过外部电子供体的激活来催化糖苷键的氧化裂解。到目前为止,只有黄素依赖的氧化还原酶(来自辅助活性[AA]家族 AA3)被证明可以激活 LPMO。在这里,我们展示了来自 的吡咯喹啉醌(PQQ)依赖性吡喃糖脱氢酶(PDH)对 LPMO 的激活,PDH 是最近发现的辅助活性家族 AA12 的创始成员。PDH 包含一个 C 端家族 1 碳水化合物结合模块(CBM1)、一个 N 端家族 AA8 细胞色素结构域和一个中央 AA12 脱氢酶结构域。我们研究了全长 PDH 及其截断变体驱动两种 LPMO 催化的能力。结果表明,PDH 确实可以激活 C-1 氧化 LPMO 9F(LPMO9F)和 C-4 氧化 LPMO 9C(LPMO9C),这种激活依赖于细胞色素结构域,并且脱氢酶和 LPMO 反应强烈耦合。两种测试的 PDH-LPMO 系统表现出相当不同的效率,而这种差异在添加作为二酚/醌氧化还原介体的游离 PQQ 后消失,表明 LPMO 在与细胞色素结构域直接相互作用时存在差异。令人惊讶的是,从 PDH 中去除 CBM 结构域对 PDH-LPMO 系统的效率有相当大的负面影响,这表明在底物附近进行电子转移是有益的。PDH 不能氧化纤维二糖低聚糖,这使得这种酶成为研究纤维素氧化 LPMO 的有用工具。溶细胞多糖单加氧酶(LPMO)因其在降解顽固性多糖方面的重要性及其在细菌毒力等生物过程中的潜在作用而受到越来越多的关注。LPMO 的作用需要外部电子供体,并且在生物质上生长的真菌会分泌各种所谓的葡萄糖-甲醇-胆碱(GMC)氧化还原酶,包括纤维二糖脱氢酶,它可以向 LPMO 提供电子。本文描述了不属于 GMC 氧化还原酶家族的酶 PDH 如何激活 LPMO,并通过以下方式提供了对激活过程的新见解:(i)描述 PDH 各个结构域(脱氢酶、细胞色素和碳水化合物结合结构域)的作用;(ii)表明 PDH 和 LPMO 酶反应强烈耦合;(iii)证明 LPMO 在被同一激活剂激活的效率方面存在差异;(iv)表明在底物表面附近进行电子转移有利于提高 PDH-LPMO 系统的整体效率。