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基于单细胞RNA测序鉴定肺腺癌中与KRAS/TP53共突变状态相关的肿瘤异质性

Identification of tumor heterogeneity associated with KRAS/TP53 co-mutation status in lung adenocarcinoma based on single-cell RNA sequencing.

作者信息

Ye Ying-Hui, Zhang Yu-Ting, Luo Yu-Lou, Xu An-Ping, Ji Ling

机构信息

Department of Laboratory Medicine, Peking University Shenzhen Hospital Shenzhen 518000, Guangdong, China.

Department of Breast Surgery, The First Affiliated Hospital, Jinan University Guangzhou 510000, Guangdong, China.

出版信息

Am J Cancer Res. 2024 Feb 15;14(2):655-678. doi: 10.62347/NXAJ9418. eCollection 2024.

Abstract

Lung cancer stands as the predominant cause of cancer-related mortality globally. Lung adenocarcinoma (LUAD), being the most prevalent subtype, garners extensive attention due to its notable heterogeneity, which significantly influences tumor development and treatment approaches. This research leverages single-cell RNA sequencing (scRNA-seq) datasets to delve into the impact of KRAS/TP53 co-mutation status on LUAD. Moreover, utilizing the TCGA-LUAD dataset, we formulated a novel predictive risk model, comprising seven prognostic genes, through LASSO regression, and subjected it to both internal and external validation sets. The study underscores the profound impact of KRAS/TP53 co-mutational status on the tumor microenvironment (TME) of LUAD. Crucially, KRAS/TP53 co-mutation markedly influences the extent of B cell infiltration and various immune-related pathways within the TME. The newly developed predictive risk model exhibited robust performance across both internal and external validation sets, establishing itself as a viable independent prognostic factor. Additionally, in vitro experiments indicate that MELTF and PLEK2 can modulate the invasion and proliferation of human non-small cell lung cancer cells. In conclusion, we elucidated that KRAS/TP53 co-mutations may modulate TME and patient prognosis by orchestrating B cells and affiliated pathways. Furthermore, we spotlight that MELTF and PLEK2 not only function as prognostic indicators for LUAD, but also lay the foundation for the exploration of innovative therapeutic approaches.

摘要

肺癌是全球癌症相关死亡的主要原因。肺腺癌(LUAD)作为最常见的亚型,因其显著的异质性而备受关注,这种异质性对肿瘤的发展和治疗方法有重大影响。本研究利用单细胞RNA测序(scRNA-seq)数据集来深入探究KRAS/TP53共突变状态对LUAD的影响。此外,利用TCGA-LUAD数据集,我们通过LASSO回归构建了一个包含七个预后基因的新型预测风险模型,并对其进行了内部和外部验证集验证。该研究强调了KRAS/TP53共突变状态对LUAD肿瘤微环境(TME)的深远影响。至关重要的是,KRAS/TP53共突变显著影响TME中B细胞浸润程度和各种免疫相关通路。新开发的预测风险模型在内部和外部验证集上均表现出强大的性能,成为一个可行的独立预后因素。此外,体外实验表明,MELTF和PLEK2可以调节人非小细胞肺癌细胞的侵袭和增殖。总之,我们阐明了KRAS/TP53共突变可能通过协调B细胞及其相关通路来调节TME和患者预后。此外,我们强调MELTF和PLEK2不仅作为LUAD的预后指标,也为探索创新治疗方法奠定了基础。

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