关于原核生物门和属的有效发表名称、正确名称及命名法变更：给困惑者的指南
On validly published names, correct names, and changes in the nomenclature of phyla and genera of prokaryotes: a guide for the perplexed.
作者信息
Oren Aharon
机构信息
Department of Plant and Environmental Sciences, The Institute of Life Sciences, The Edmond J. Safra Campus, The Hebrew University of Jerusalem, Jerusalem, Israel.
出版信息
NPJ Biofilms Microbiomes. 2024 Mar 11;10(1):20. doi: 10.1038/s41522-024-00494-9.
Abstract
The nomenclature of prokaryotes is regulated by the rules of the International Code of Nomenclature of Prokaryotes. In view of inconsistencies in the use of names of many prokaryotic taxa and confusion caused by recent nomenclature changes, this essay presents an overview of how to use correct names of taxa. It includes information on validly published names of prokaryotic phyla, the way to deal with names of species that were transferred to newly created genera, and the nomenclature of uncultivated Candidatus taxa. It also provides recommendations for databases that provide reliable nomenclature information.
摘要
原核生物的命名法由《原核生物国际命名法规》的规则来规范。鉴于许多原核生物分类单元名称使用上的不一致以及近期命名法变化所造成的混乱，本文概述了如何使用正确的分类单元名称。它包括有关原核生物门有效发表名称的信息、处理转移到新创建属的物种名称的方法以及未培养的“暂定”分类单元的命名法。它还为提供可靠命名信息的数据库提供了建议。
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本文引用的文献
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Validation List no. 215. Valid publication of new names and new combinations effectively published outside the IJSEM.验证列表编号215。新名称和新组合在《国际系统与进化微生物学杂志》（IJSEM）之外有效发表的有效出版物。
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2
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3
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FEMS Microbiol Lett. 2023 Jan 17;370. doi: 10.1093/femsle/fnad071.
4
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Int J Syst Evol Microbiol. 2023 May;73(5a). doi: 10.1099/ijsem.0.005585.
5
List. Lists of names of prokaryotic phyla.列表。原核生物门的名称列表。
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6
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7
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Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005708.
8
Judicial Opinions 112-122.判决书 112-122.
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New Microbes New Infect. 2021 Sep 13;44:100932. doi: 10.1016/j.nmni.2021.100932. eCollection 2021 Nov.
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