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解析液-液相分离对有序蛋白β-乳球蛋白的结构、动力学和酶活性的诱导调控。

Deciphering the liquid-liquid phase separation induced modulation in the structure, dynamics, and enzymatic activity of an ordered protein β-lactoglobulin.

作者信息

Rai Saurabh, Pramanik Srikrishna, Mukherjee Saptarshi

机构信息

Department of Chemistry, Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road Bhopal 462066 Madhya Pradesh India

出版信息

Chem Sci. 2024 Feb 8;15(11):3936-3948. doi: 10.1039/d3sc06802a. eCollection 2024 Mar 13.

Abstract

Owing to the significant role in the subcellular organization of biomolecules, physiology, and the realm of biomimetic materials, studies related to biomolecular condensates formed through liquid-liquid phase separation (LLPS) have emerged as a growing area of research. Despite valuable contributions of prior research, there is untapped potential in exploring the influence of phase separation on the conformational dynamics and enzymatic activities of native proteins. Herein, we investigate the LLPS of β-lactoglobulin (β-LG), a non-intrinsically disordered protein, under crowded conditions. In-depth characterization through spectroscopic and microscopic techniques revealed the formation of dynamic liquid-like droplets, distinct from protein aggregates, driven by hydrophobic interactions. Our analyses revealed that phase separation can alter structural flexibility and photophysical properties. Importantly, the phase-separated β-LG exhibited efficient enzymatic activity as an esterase; a characteristic seemingly exclusive to β-LG droplets. The droplets acted as robust catalytic crucibles, providing an ideal environment for efficient ester hydrolysis. Further investigation into the catalytic mechanism suggested the involvement of specific amino acid residues, rather than general acid or base catalysis. Also, the alteration in conformational distribution caused by phase separation unveils the latent functionality. Our study delineates the understanding of protein phase separation and insights into the diverse catalytic strategies employed by proteins. It opens exciting possibilities for designing functional artificial compartments based on phase-separated biomolecules.

摘要

由于在生物分子的亚细胞组织、生理学以及仿生材料领域中具有重要作用,通过液-液相分离(LLPS)形成的生物分子凝聚物相关研究已成为一个不断发展的研究领域。尽管先前的研究做出了有价值的贡献,但在探索相分离对天然蛋白质的构象动力学和酶活性的影响方面仍有未开发的潜力。在此,我们研究了在拥挤条件下非内在无序蛋白β-乳球蛋白(β-LG)的液-液相分离。通过光谱和显微镜技术进行的深入表征揭示了由疏水相互作用驱动形成的动态液滴的形成,这些液滴与蛋白质聚集体不同。我们的分析表明,相分离可以改变结构灵活性和光物理性质。重要的是,相分离的β-LG作为酯酶表现出高效的酶活性;这一特性似乎是β-LG液滴所特有的。这些液滴充当了强大的催化坩埚,为高效酯水解提供了理想环境。对催化机制的进一步研究表明,特定氨基酸残基参与其中,而非一般的酸碱催化。此外,相分离引起的构象分布变化揭示了潜在功能。我们的研究阐述了对蛋白质相分离的理解以及对蛋白质所采用的多种催化策略的见解。它为基于相分离生物分子设计功能性人工隔室开辟了令人兴奋的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3417/10935713/bb99a279a66e/d3sc06802a-f1.jpg

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