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组织学引导的肿瘤氧合数学模型:物理和计算参数的敏感性分析

Histology-guided mathematical model of tumor oxygenation: sensitivity analysis of physical and computational parameters.

作者信息

Ojwang' Awino Maureiq E, Bazargan Sarah, Johnson Joseph O, Pilon-Thomas Shari, Rejniak Katarzyna A

机构信息

Integrated Mathematical Oncology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA.

Department of Immunology, H. Lee Moffitt Cancer Center & Research Institute, Tampa, FL, USA.

出版信息

bioRxiv. 2024 Mar 10:2024.03.05.583363. doi: 10.1101/2024.03.05.583363.

DOI:10.1101/2024.03.05.583363
PMID:38496532
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10942376/
Abstract

A hybrid off-lattice agent-based model has been developed to reconstruct the tumor tissue oxygenation landscape based on histology images and simulated interactions between vasculature and cells with microenvironment metabolites. Here, we performed a robustness sensitivity analysis of that model's physical and computational parameters. We found that changes in the domain boundary conditions, the initial conditions, and the Michaelis constant are negligible and, thus, do not affect the model outputs. The model is also not sensitive to small perturbations of the vascular influx or the maximum consumption rate of oxygen. However, the model is sensitive to large perturbations of these parameters and changes in the tissue boundary condition, emphasizing an imperative aim to measure these parameters experimentally.

摘要

已经开发了一种基于混合非晶格代理的模型,用于根据组织学图像以及脉管系统与细胞之间与微环境代谢物的模拟相互作用来重建肿瘤组织氧合景观。在此,我们对该模型的物理和计算参数进行了稳健性敏感性分析。我们发现,域边界条件、初始条件和米氏常数的变化可以忽略不计,因此不会影响模型输出。该模型对血管流入或氧气最大消耗率的小扰动也不敏感。然而,该模型对这些参数的大扰动和组织边界条件的变化敏感,这强调了通过实验测量这些参数的迫切目标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/480e554eaebd/nihpp-2024.03.05.583363v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/1a12b83f93b7/nihpp-2024.03.05.583363v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/72f51da8c8f3/nihpp-2024.03.05.583363v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/6624475c45c2/nihpp-2024.03.05.583363v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/51dcec578c4d/nihpp-2024.03.05.583363v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/6d4deec27280/nihpp-2024.03.05.583363v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/1eaab4ff6934/nihpp-2024.03.05.583363v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/480e554eaebd/nihpp-2024.03.05.583363v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/1a12b83f93b7/nihpp-2024.03.05.583363v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/72f51da8c8f3/nihpp-2024.03.05.583363v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/6624475c45c2/nihpp-2024.03.05.583363v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/51dcec578c4d/nihpp-2024.03.05.583363v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/6d4deec27280/nihpp-2024.03.05.583363v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/1eaab4ff6934/nihpp-2024.03.05.583363v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/01c8/10942376/480e554eaebd/nihpp-2024.03.05.583363v1-f0007.jpg

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本文引用的文献

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Tissue Eng Part C Methods. 2022 Jun;28(6):264-271. doi: 10.1089/ten.TEC.2022.0061.
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Bridging cell-scale simulations and radiologic images to explain short-time intratumoral oxygen fluctuations.将细胞尺度模拟与放射影像相结合,以解释短时间内肿瘤内氧波动的原因。
PLoS Comput Biol. 2021 Jul 26;17(7):e1009206. doi: 10.1371/journal.pcbi.1009206. eCollection 2021 Jul.
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Multiscale modeling of human cerebrovasculature: A hybrid approach using image-based geometry and a mathematical algorithm.
人体脑血管的多尺度建模:基于图像的几何形状和数学算法的混合方法。
PLoS Comput Biol. 2020 Jun 22;16(6):e1007943. doi: 10.1371/journal.pcbi.1007943. eCollection 2020 Jun.
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Comparison of Drug Inhibitory Effects ([Formula: see text]) in Monolayer and Spheroid Cultures.单层培养和球体培养中的药物抑制效果比较([公式:见正文])。
Bull Math Biol. 2020 Jun 3;82(6):68. doi: 10.1007/s11538-020-00746-7.
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Drug-Induced Resistance in Micrometastases: Analysis of Spatio-Temporal Cell Lineages.微转移中药物诱导的耐药性:时空细胞谱系分析
Front Physiol. 2020 Apr 17;11:319. doi: 10.3389/fphys.2020.00319. eCollection 2020.
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Hybrid modeling frameworks of tumor development and treatment.肿瘤发展和治疗的混合建模框架。
Wiley Interdiscip Rev Syst Biol Med. 2020 Jan;12(1):e1461. doi: 10.1002/wsbm.1461. Epub 2019 Jul 17.
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Morphophenotypic classification of tumor organoids as an indicator of drug exposure and penetration potential.肿瘤类器官的形态表型分类作为药物暴露和渗透潜力的指标。
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Imaging tumor microscopic viscosity in vivo using molecular rotors.利用分子转子在体成像肿瘤微观粘度。
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A Green's function method for simulation of time-dependent solute transport and reaction in realistic microvascular geometries.一种用于模拟真实微血管几何结构中随时间变化的溶质传输和反应的格林函数方法。
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