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关于光合水氧化中底物-水交换实验的模拟与解读

On the simulation and interpretation of substrate-water exchange experiments in photosynthetic water oxidation.

作者信息

Chernev Petko, Aydin A Orkun, Messinger Johannes

机构信息

Molecular Biomimetics, Department of Chemistry - Ångström Laboratory, 75120, Uppsala, Sweden.

出版信息

Photosynth Res. 2024 Dec;162(2-3):413-426. doi: 10.1007/s11120-024-01084-8. Epub 2024 Mar 21.

Abstract

Water oxidation by photosystem II (PSII) sustains most life on Earth, but the molecular mechanism of this unique process remains controversial. The ongoing identification of the binding sites and modes of the two water-derived substrate oxygens ('substrate waters') in the various intermediates (S states, i = 0, 1, 2, 3, 4) that the water-splitting tetra-manganese calcium penta-oxygen (MnCaO) cluster attains during the reaction cycle provides central information towards resolving the unique chemistry of biological water oxidation. Mass spectrometric measurements of single- and double-labeled dioxygen species after various incubation times of PSII with HO provide insight into the substrate binding modes and sites via determination of exchange rates. Such experiments have revealed that the two substrate waters exchange with different rates that vary independently with the S state and are hence referred to as the fast (W) and the slow (W) substrate waters. New insight for the molecular interpretation of these rates arises from our recent finding that in the S state, under special experimental conditions, two different rates of W exchange are observed that appear to correlate with the high spin and low spin conformations of the MnCaO cluster. Here, we reexamine and unite various proposed methods for extracting and assigning rate constants from this recent data set. The analysis results in a molecular model for substrate-water binding and exchange that reconciles the expected non-exchangeability of the central oxo bridge O5 when located between two Mn(IV) ions with the experimental and theoretical assignment of O5 as W in all S states. The analysis also excludes other published proposals for explaining the water exchange kinetics.

摘要

光系统II(PSII)介导的水氧化维持着地球上的大部分生命,但这一独特过程的分子机制仍存在争议。在反应循环中,水裂解四锰钙五氧(MnCaO)簇所经历的各种中间体(S态,i = 0、1、2、3、4)中,来自水的两种底物氧(“底物水”)的结合位点和模式不断被确定,这为解决生物水氧化的独特化学过程提供了核心信息。在PSII与H₂¹⁸O孵育不同时间后,对单标记和双标记双氧物种进行质谱测量,通过确定交换速率,深入了解底物的结合模式和位点。此类实验表明,两种底物水以不同速率交换,且这些速率随S态独立变化,因此被称为快速(Wf)和慢速(Ws)底物水。我们最近发现,在S₂态下,在特殊实验条件下观察到W交换的两种不同速率,这似乎与MnCaO簇的高自旋和低自旋构象相关,从而为这些速率的分子解释带来了新见解。在此,我们重新审视并整合了从该最新数据集提取和确定速率常数的各种提议方法。分析结果得出了一个底物 - 水结合和交换的分子模型,该模型协调了位于两个Mn(IV)离子之间时中心氧桥O5预期的不可交换性与在所有S态下将O5确定为Wf的实验和理论结果。该分析还排除了其他已发表的用于解释水交换动力学的提议。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee88/11639282/6d3eb2704290/11120_2024_1084_Fig1_HTML.jpg

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