Bioinformatics Center, Institute for Chemical Research, Kyoto University.
Shiogama Field Station, Fisheries Resources Institute, Japan Fisheries Research and Education Agency.
Microbes Environ. 2024;39(1). doi: 10.1264/jsme2.ME23093.
Parmales (Bolidophyceae) is a minor eukaryotic phytoplankton group, sister to diatoms, which exists as two distinct forms of unicellular organisms: silicified cells and naked flagellates. Since their discovery, many field studies on Parmales have been performed; however, their global distribution has not yet been examined in detail. We herein compiled more than 3,000 marine DNA metabarcoding datasets targeting the V4 region of the 18S rRNA gene from the EukBank database. By linking this large dataset with the latest morphological and genetic information, we provide updated estimates on the diversity and distribution of Parmales in the global ocean at a fine taxonomic resolution. Parmalean amplicon sequence variants (ASVs) were detected in nearly 90% of the samples analyzed. However, the relative abundance of parmaleans in the eukaryotic community was less than 0.2% on average, and the estimated true richness of parmalean ASVs was approximately 316 ASVs, confirming their low abundance and diversity. A phylogenetic ana-lysis divided these algae into four clades, and three known morphotypes of silicified cells were classified into three different clades. The abundance of Parmales is generally high in the poles and decreases towards the tropics, and individual clades/subclades show further distinctions in their distribution. Collectively, the present results suggest clade/subclade-specific adaptation to different ecological niches.
Parmales(Bolidophyceae)是一个较小的真核浮游植物群,与硅藻关系密切,存在两种不同形式的单细胞生物:硅化细胞和裸鞭毛。自发现以来,已经对 Parmales 进行了许多实地研究,但它们的全球分布尚未得到详细研究。我们在此编译了来自 EukBank 数据库的超过 3000 个针对 18S rRNA 基因 V4 区的海洋 DNA 宏条形码数据集。通过将这个大型数据集与最新的形态学和遗传学信息联系起来,我们以精细的分类分辨率提供了全球海洋中 Parmales 多样性和分布的最新估计。在分析的近 90%的样本中检测到 Parmalean 扩增子序列变异体(ASV)。然而, Parmales 在真核生物群落中的相对丰度平均低于 0.2%,估计的 Parmalean ASV 的真实丰富度约为 316 个 ASV,证实了它们的低丰度和多样性。系统发育分析将这些藻类分为四个分支,三种已知的硅化细胞形态被分为三个不同的分支。 Parmales 的丰度通常在极地较高,向热带减少,而个别分支/亚分支在其分布上进一步有所区分。总的来说,这些结果表明,特定分支/亚分支对不同生态位具有特异性适应。