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一种新发现酵母物种的基因组分析,. (你提供的原文不完整,请补充完整以便得到更准确译文)

Genome Analysis of a Newly Discovered Yeast Species, .

作者信息

Ryan Adam P, Groenewald Marizeth, Smith Maudy Th, Holohan Cian, Boekhout Teun, Wolfe Kenneth H, Butler Geraldine

机构信息

School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, D04 V1W8 Dublin 4, Ireland.

Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands.

出版信息

J Fungi (Basel). 2024 Feb 28;10(3):180. doi: 10.3390/jof10030180.

Abstract

Annual surveys of Irish soil samples identified three isolates, CBS 16921 (UCD88), CBS 18246 (UCD443), and CBS 18247 (UCD483), of an apiculate yeast species within the genus. The internal transcribed spacer (ITS) and D1/D2 region of the large subunit (LSU) rRNA sequences showed that these are isolates of the recently described species , first isolated from Southwest China. No genome sequence for is currently available. The genome sequences of the three Irish isolates were determined using short-read (Illumina) sequencing, and the sequence of one isolate (CBS 16921) was assembled to chromosome level using long-read sequencing (Oxford Nanopore Technologies). Phylogenomic analysis shows that belongs to the fast-evolving lineage (FEL) of . Only one idiomorph (encoding α1) was identified in all three sequenced isolates, consistent with one mating type of a heterothallic species. Genome comparisons showed that there has been a rearrangement near α of FEL species compared to isolates from the slowly evolving lineage (SEL).

摘要

对爱尔兰土壤样本进行的年度调查在该属中鉴定出了三种尖顶酵母菌株,分别为CBS 16921(UCD88)、CBS 18246(UCD443)和CBS 18247(UCD483)。大亚基(LSU)rRNA序列的内部转录间隔区(ITS)和D1/D2区域显示,这些是最近描述的物种的分离株,该物种最初是从中国西南部分离出来的。目前尚无该物种的基因组序列。使用短读长(Illumina)测序确定了这三种爱尔兰分离株的基因组序列,并使用长读长测序(牛津纳米孔技术公司)将其中一个分离株(CBS 16921)的序列组装到染色体水平。系统基因组分析表明,该物种属于该属快速进化谱系(FEL)。在所有三个测序的该物种分离株中仅鉴定出一种该物种特异性序列型(编码α1),这与异宗配合物种的一种交配型一致。基因组比较表明,与来自缓慢进化谱系(SEL)的分离株相比,FEL物种的α附近发生了重排。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b019/10970870/094791a50ab1/jof-10-00180-g001.jpg

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