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从牧野野豌豆根部分离出的两种新物种sp. nov.和sp. nov.的基因组序列草图分析

Draft Genome Sequence Analyses of Two Novel sp. nov. and sp. nov. Isolated from the Root of Makino.

作者信息

Park Sunho, Kim Inhyup, Chhetri Geeta, Jung Yonghee, Woo Haejin, Seo Taegun

机构信息

Department of Life Science, Dongguk University-Seoul, Goyang 10326, Republic of Korea.

出版信息

Life (Basel). 2024 Feb 22;14(3):296. doi: 10.3390/life14030296.

Abstract

Gram-negative, rod-shaped, and aerobic bacteria designated chi1 and chi5 were isolated from the root of Makino. Phylogenetics utilizing 16S rRNA and whole-genome sequences of the two novel strains chi1 and chi5 confirmed that they were related to the genera and , respectively. For the novel strains chi1 and chi5, the digital DNA-DNA hybridization values (19-20% and 22.1-36.6%, respectively) and average nucleotide identity values (74.4-76.5% and 79.1-88.9%, respectively) fell within the range for the genera and , respectively. Pangenome analyses of the novel strains chi1 and chi5 revealed 357 and 368 singletons genes, respectively. The genomic DNA G + C contents of the strains chi1 and chi5 were 57.2% and 31.5%, respectively. The major fatty acids of strain chi1 were C, C, and summed feature 3 (C6 and/or C7), while those of the strain chi5 were iso-C 3OH, iso-C 3OH, and iso-C. Data from the phylogenetic, phylogenomic, pangenome, genomic, physiological, and biochemical analyses indicated that the novel strains were distinct. Therefore, we propose the names (type strain chi1 = KACC 23259 = TBRC 17652) and (type strain chi5 = KACC 23262 = TBRC 17900) for the studied bacterial strains.

摘要

从牧野草根部分离出革兰氏阴性、杆状且需氧的细菌,分别命名为chi1和chi5。利用两种新菌株chi1和chi5的16S rRNA和全基因组序列进行系统发育分析,证实它们分别与属和属相关。对于新菌株chi1和chi5,数字DNA-DNA杂交值(分别为19 - 20%和22.1 - 36.6%)和平均核苷酸同一性值(分别为74.4 - 76.5%和79.1 - 88.9%)分别落在属和属的范围内。对新菌株chi1和chi5的泛基因组分析分别揭示了357个和368个单拷贝基因。菌株chi1和chi5的基因组DNA G + C含量分别为57.2%和31.5%。菌株chi1的主要脂肪酸为C、C和总和特征3(C6和/或C7),而菌株chi5的主要脂肪酸为异-C 3OH、异-C 3OH和异-C。系统发育、系统基因组、泛基因组、基因组、生理和生化分析的数据表明这些新菌株是不同的。因此,我们为所研究的细菌菌株提议命名为(模式菌株chi1 = KACC 23259 = TBRC 17652)和(模式菌株chi5 = KACC 23262 = TBRC 17900)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edbe/10971456/6fad670c4b6d/life-14-00296-g001.jpg

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