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长非编码 RNA LINC-PINT 作为一种新型的人类癌症预后生物标志物的meta 分析和机器学习研究

Long non-coding RNA LINC-PINT as a novel prognostic biomarker in human cancer: a meta-analysis and machine learning.

机构信息

Department of Hepatobiliary and Pancreatic Surgery, Jilin University Second Hospital, Changchun, Jilin, China.

Department of Hepatobiliary Disease, Fuzong Clinical Medical College of Fujian Medical University, Fuzhou, Fujian, China.

出版信息

Sci Rep. 2024 Mar 29;14(1):7483. doi: 10.1038/s41598-024-57836-y.

DOI:10.1038/s41598-024-57836-y
PMID:38553526
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10980720/
Abstract

Long intergenic non-protein coding RNA, P53 induced transcript (LINC-PINT) exhibits different expression patterns in the majority of tumors, yet its relationship with cancer prognosis remains a subject of debate. This study aims to comprehensively investigate the prognostic significance of LINC-PINT in diverse human cancer. A systematic search was conducted in PubMed, Embase, Cochrane Library, and Web of Science databases to identify pertinent studies exploring the correlation between LINC-PINT expression and cancer patients. Moreover, bioinformatics analysis and in vitro validation were used to validate the results of the meta-analysis and to investigate the potential oncogenic mechanism of LINC-PINT. The meta-analysis encompassed 8 studies, involving 911 patients. The pooled analysis demonstrated a significant association between upregulation of LINC-PINT expression and better survival (P = 0.002) during the cancers. Meanwhile, its downregulation was correlated with advanced tumor staging (P = 0.04) and tumor differentiation (P = 0.03). Additionally, bioinformatics analysis showed that LINC-PINT expression was observed to be linked with Tumor Mutational Burden (TMB) and Microsatellite Instability (MSI) in tumors, the results of bioinformatics were verified by qRT-PCR. And functional enrichment analysis hinted at its involvement in tumorigenesis and tumor progression. Dysregulated LICN-PINT expression is associated with the clinical prognostic and pathological features of various cancers, exhibiting substantial potential as a novel prognostic biomarker.

摘要

长链非编码 RNA,P53 诱导转录物(LINC-PINT)在大多数肿瘤中表现出不同的表达模式,但它与癌症预后的关系仍存在争议。本研究旨在全面研究 LINC-PINT 在不同人类癌症中的预后意义。系统地在 PubMed、Embase、Cochrane Library 和 Web of Science 数据库中进行了检索,以确定探讨 LINC-PINT 表达与癌症患者相关性的相关研究。此外,还进行了生物信息学分析和体外验证,以验证荟萃分析的结果,并研究 LINC-PINT 的潜在致癌机制。荟萃分析包括 8 项研究,涉及 911 名患者。荟萃分析表明,LINC-PINT 表达上调与癌症患者的生存改善显著相关(P = 0.002)。同时,其下调与肿瘤分期较晚(P = 0.04)和肿瘤分化较差(P = 0.03)相关。此外,生物信息学分析表明,LINC-PINT 表达与肿瘤中的肿瘤突变负担(TMB)和微卫星不稳定性(MSI)相关,生物信息学的结果通过 qRT-PCR 得到了验证。并且功能富集分析提示其参与了肿瘤发生和肿瘤进展。失调的 LICN-PINT 表达与各种癌症的临床预后和病理特征相关,具有作为新型预后生物标志物的巨大潜力。

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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f8b/10980720/53ddc7359e47/41598_2024_57836_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f8b/10980720/a8d6c16b6f14/41598_2024_57836_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f8b/10980720/2e85f0c7b990/41598_2024_57836_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f8b/10980720/3ddecad16ae1/41598_2024_57836_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f8b/10980720/d1a1e4017568/41598_2024_57836_Fig7_HTML.jpg
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本文引用的文献

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Downregulation of lncRNA ASMTL-AS1 in Epithelial Ovarian Cancer Correlates with Worse Prognosis and Cancer Progression.lncRNA ASMTL-AS1 在卵巢上皮性癌中的下调与更差的预后和癌症进展相关。
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lncRNA ELFN1-AS1 predicts poor prognosis and promotes tumor progression of non-small cell lung cancer by sponging miR-497.
长链非编码 RNA ELFN1-AS1 通过海绵吸附 miR-497 预测非小细胞肺癌的不良预后并促进肿瘤进展。
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LncRNA-mediated DNA methylation: an emerging mechanism in cancer and beyond.长链非编码 RNA 介导的 DNA 甲基化:癌症及其他领域的新兴机制。
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LncRNA Biomarkers of Inflammation and Cancer.lncRNA 炎症和癌症的生物标志物。
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Long intragenic non-coding RNA p53-induced transcript (LINC-PINT) as a novel prognosis indicator and therapeutic target in cancer.长链基因内非编码RNA p53诱导转录本(LINC-PINT)作为癌症中的一种新型预后指标和治疗靶点。
Biomed Pharmacother. 2021 Nov;143:112127. doi: 10.1016/j.biopha.2021.112127. Epub 2021 Aug 30.
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LncRNA LINC-PINT Inhibits Malignant Behaviors of Laryngeal Squamous Cell Carcinoma Cells via Inhibiting ZEB1.长链非编码RNA LINC-PINT通过抑制ZEB1抑制喉鳞状细胞癌细胞的恶性行为。
Pathol Oncol Res. 2021 Apr 1;27:584466. doi: 10.3389/pore.2021.584466. eCollection 2021.
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Cancer Manag Res. 2021 Jun 1;13:4393-4401. doi: 10.2147/CMAR.S305547. eCollection 2021.
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LINC-PINT impedes DNA repair and enhances radiotherapeutic response by targeting DNA-PKcs in nasopharyngeal cancer.LINC-PINT 通过靶向 DNA-PKcs 抑制 DNA 修复并增强鼻咽癌的放射治疗反应。
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