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嗜盐古菌沃氏嗜盐菌中5S核糖体RNA基因区域及其产物的序列

Sequence of 5S ribosomal RNA gene regions and their products in the archaebacterium Halobacterium volcanii.

作者信息

Daniels C J, Hofman J D, MacWilliam J G, Doolittle W F, Woese C R, Luehrsen K R, Fox G E

出版信息

Mol Gen Genet. 1985;198(2):270-4. doi: 10.1007/BF00383005.

DOI:10.1007/BF00383005
PMID:3856725
Abstract

We show that the archaebacterium Halobacterium volcanii contains two ribosomal RNA gene clusters, in which genes for individual rRNAs lie in the order 16S-23S-5S. We have cloned the 5S rRNA genes of both clusters and present sequences of the two 5S rRNA genes and their 5' and 3' flanking regions, as well as the sequence of H. volcanii 5S rRNA. We show that a gene for a tRNACys lies downstream from one, but not the other, 5S rRNA gene, and have obtained evidence that this tRNA gene is transcribed in vivo. We discuss regions of potential secondary structure which may be involved in transcription termination. We note regions of unexpected flanking sequence conversation both within H. volcanii 5S rRNA gene regions, and between them and the corresponding 5S rRNA gene region of H. cutirubrum (Hui and Dennis 1984).

摘要

我们发现嗜盐古菌嗜盐栖热菌含有两个核糖体RNA基因簇,其中各个rRNA的基因排列顺序为16S - 23S - 5S。我们克隆了两个基因簇的5S rRNA基因,并给出了两个5S rRNA基因及其5'和3'侧翼区域的序列,以及嗜盐栖热菌5S rRNA的序列。我们发现一个tRNACys基因位于其中一个而非另一个5S rRNA基因的下游,并且有证据表明该tRNA基因在体内会被转录。我们讨论了可能参与转录终止的潜在二级结构区域。我们注意到在嗜盐栖热菌5S rRNA基因区域内,以及它们与嗜盐栖红菌(Hui和Dennis,1984)相应的5S rRNA基因区域之间,存在意外的侧翼序列保守区域。

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Sequence of 5S ribosomal RNA gene regions and their products in the archaebacterium Halobacterium volcanii.嗜盐古菌沃氏嗜盐菌中5S核糖体RNA基因区域及其产物的序列
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2
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Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii.在古菌沃氏嗜热栖热菌中,5S rRNA 5'端的成熟在体外由核酸内切酶tRNase Z催化。
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本文引用的文献

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Organization of rRNA structural genes in the archaebacterium Thermoplasma acidophilum.嗜热嗜酸栖热菌中古细菌核糖体RNA结构基因的组织方式
Nucleic Acids Res. 1982 Nov 25;10(22):7231-45. doi: 10.1093/nar/10.22.7231.
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Conservation of secondary structure in 5 S ribosomal RNA: a uniform model for eukaryotic, eubacterial, archaebacterial and organelle sequences is energetically favourable.5S核糖体RNA二级结构的保守性:真核生物、真细菌、古细菌和细胞器序列的统一模型在能量上是有利的。
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ISH51: a large, degenerate family of insertion sequence-like elements in the genome of the archaebacterium, Halobacterium volcanii.ISH51:嗜盐古菌火山栖嗜盐菌基因组中一个类似插入序列元件的大型退化家族。
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Mol Gen Genet. 1986 Jul;204(1):133-40. doi: 10.1007/BF00330200.
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Structure of genes and an insertion element in the methane producing archaebacterium Methanobrevibacter smithii.产甲烷古细菌史氏甲烷短杆菌中基因和插入元件的结构
Mol Gen Genet. 1985;200(1):47-59. doi: 10.1007/BF00383311.
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Isolation and characterization of the rRNA gene clusters of Halobacterium marismortui.死海嗜盐菌rRNA基因簇的分离与鉴定
J Bacteriol. 1989 Jun;171(6):3479-85. doi: 10.1128/jb.171.6.3479-3485.1989.
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Molecular biology of archaebacteria.古细菌的分子生物学
J Bacteriol. 1986 Nov;168(2):471-8. doi: 10.1128/jb.168.2.471-478.1986.
10
Compilation of tRNA sequences and sequences of tRNA genes.tRNA序列及tRNA基因序列的汇编。
Nucleic Acids Res. 1991 Apr 25;19 Suppl(Suppl):2127-71. doi: 10.1093/nar/19.suppl.2127.
真核细胞质5S核糖体RNA的二级结构
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4
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Nucleic Acids Res. 1983 Nov 11;11(21):7537-44. doi: 10.1093/nar/11.21.7537.
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Putative introns in tRNA genes of prokaryotes.原核生物tRNA基因中的推定内含子。
Proc Natl Acad Sci U S A. 1983 Jun;80(11):3309-12. doi: 10.1073/pnas.80.11.3309.
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A rapid boiling method for the preparation of bacterial plasmids.一种制备细菌质粒的快速煮沸法。
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