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基于中性粒细胞胞外诱捕网的前列腺腺癌分子亚型鉴定及预后特征分析

Identification of Molecular Subtype and Prognostic Signature for Prostate Adenocarcinoma based on Neutrophil Extracellular Traps.

作者信息

Zheng Yanfen, Sun Hui, Yang Shanshan, Liu Wei, Jiang Guanmin

机构信息

Department of Clinical Laboratory, The Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, China.

出版信息

J Cancer. 2024 Mar 17;15(9):2678-2690. doi: 10.7150/jca.93275. eCollection 2024.

Abstract

: Prostate adenocarcinoma (PRAD) is one of the most common cancers in male. Increasing evidences pointed out that Neutrophil Extracellular Traps (NETs) play an important role in tumor angiogenesis, tumor metastasis and drug resistance. However, limited systematic studies regarding the role of NETs in PRAD have been performed. Identification of biomarkers based on NETs might facilitate risk stratification which help optimizing the clinical strategies. : NETs-related genes with differential expressions were identified between PRAD and adjacent normal tissues in TCGA-PRAD dataset. Consensus cluster analysis was performed to determine the PRAD subtypes based on the different-expressed NETs-related genes. The difference of pathway enrichment, infiltrating immune cell and genomic mutation were also evaluated between subtypes. LASSO cox regression analysis was conducted to construct a NETs-related prognostic signature. : We identified 19 NETs related genes with differential expressions between PRAD and adjacent normal tissue in TCGA-PRAD dataset. Two significant subtypes were identified based on these 19 genes by consensus cluster analysis, namely subtype 1 and subtype 2. Significant differences in prognosis, immune infiltration and tumor mutation burden were observed in subtypes. LASSO Cox regression analysis identified a NETs-associated prognostic signature including 13 genes, and this signature had a good performance in predicting the progression-free survival of PRAD patients. Further integrated analysis indicated that MMP9 mostly expressed in Mono/Macrophage cells might play a role in regulating NETs formation via neutrophil activation in PRAD. : To sum up, the current study identified two NETs-related molecular subtypes and based on which constructed a prognostic signature for PRAD.

摘要

前列腺腺癌(PRAD)是男性最常见的癌症之一。越来越多的证据表明,中性粒细胞胞外陷阱(NETs)在肿瘤血管生成、肿瘤转移和耐药性中发挥着重要作用。然而,关于NETs在PRAD中的作用,有限的系统研究已经开展。基于NETs鉴定生物标志物可能有助于风险分层,从而有助于优化临床策略。

在TCGA-PRAD数据集中,鉴定出PRAD与相邻正常组织之间差异表达的NETs相关基因。进行共识聚类分析以基于差异表达的NETs相关基因确定PRAD亚型。还评估了各亚型之间的通路富集、浸润免疫细胞和基因组突变的差异。进行LASSO Cox回归分析以构建与NETs相关的预后特征。

我们在TCGA-PRAD数据集中鉴定出19个PRAD与相邻正常组织之间差异表达的NETs相关基因。通过共识聚类分析基于这19个基因鉴定出两个显著亚型,即亚型1和亚型2。在各亚型中观察到预后、免疫浸润和肿瘤突变负担的显著差异。LASSO Cox回归分析鉴定出一个包含13个基因的与NETs相关的预后特征,并且该特征在预测PRAD患者的无进展生存期方面具有良好表现。进一步的综合分析表明,主要在单核/巨噬细胞中表达的MMP9可能通过激活PRAD中的中性粒细胞在调节NETs形成中发挥作用。

综上所述,当前研究鉴定出两种与NETs相关的分子亚型,并在此基础上构建了PRAD的预后特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6820/10988314/deec718a5812/jcav15p2678g001.jpg

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