Fromont-Racine Micheline, Khanna Varun, Jacquier Alain, Badis Gwenael
Cytoplasmic mRNA surveillance in yeast, Institut Pasteur, Paris, Île-de-France, France.
UMR3525, French National Centre for Scientific Research, Paris, Île-de-France, France.
MicroPubl Biol. 2024 Feb 22;2024. doi: 10.17912/micropub.biology.001112. eCollection 2024.
27 years after the yeast genome sequencing, the function of many ORFs remain unknown. Despite the evolutionary distance between human and yeast, homology with the conserved DEAH/DExH-box helicase domains allowed us to list DHX29, DHX36 and DHX57 as three putative homologs of the yeast Ylr419wp. Functional studies first linked the Ylr419w protein to the translating ribosome and cross-linking and analysis of cDNA (CRAC) experiments determined the precise region of Ylr419wp in contact with the ribosome. It corresponds to the loop of the h16 helix in the 18S rRNA designing the translation initiation factor DHX29, as the functional homolog of Ylr419wp.
酵母基因组测序27年后,许多开放阅读框(ORF)的功能仍然未知。尽管人类和酵母之间存在进化距离,但与保守的DEAH/DExH-box解旋酶结构域的同源性使我们能够将DHX29、DHX36和DHX57列为酵母Ylr419wp的三个假定同源物。功能研究首先将Ylr419w蛋白与正在翻译的核糖体联系起来,并且通过交联和cDNA分析(CRAC)实验确定了Ylr419wp与核糖体接触的精确区域。它对应于18S rRNA中h16螺旋的环,该环设计了翻译起始因子DHX29,作为Ylr419wp的功能同源物。