• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

全基因组鉴定和分析双单倍体(DH)杨属 EIN3/EIL 转录因子基因家族。

Genome-Wide Identification and Analysis of the EIN3/EIL Transcription Factor Gene Family in Doubled Haploid (DH) Poplar.

机构信息

College of Life Science, Northeast Forestry University, Harbin 150040, China.

State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China.

出版信息

Int J Mol Sci. 2024 Apr 8;25(7):4116. doi: 10.3390/ijms25074116.

DOI:10.3390/ijms25074116
PMID:38612925
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11012330/
Abstract

Ethylene (ET) is an important phytohormone that regulates plant growth, development and stress responses. The ethylene-insensitive3/ethylene-insensitive3-like (EIN3/EIL) transcription factor family, as a key regulator of the ET signal transduction pathway, plays an important role in regulating the expression of ET-responsive genes. Although studies of EIN3/EIL family members have been completed in many species, their role in doubled haploid (DH) poplar derived from another culture of diploid × (donor tree, DT) remains ambiguous. In this study, a total of seven EIN3/EIL gene family members in the DH poplar genome were identified. Basic physical and chemical property analyses of these genes were performed, and these proteins were predicted to be localized to the nucleus. According to the phylogenetic relationship, EIN3/EIL genes were divided into two groups, and the genes in the same group had a similar gene structure and conserved motifs. The expression patterns of EIN3/EIL genes in the apical buds of different DH poplar plants were analyzed based on transcriptome data. At the same time, the expression patterns of , , and genes in different tissues of different DH plants were detected via RT-qPCR, including the apical buds, young leaves, functional leaves, xylem, cambium and roots. The findings presented above indicate notable variations in the expression levels of genes across various tissues of distinct DH plants. Finally, the gene was overexpressed in DT, and the transgenic plants showed a dwarf phenotype, indicating that the gene was involved in regulating the growth and development of poplar. In this study, the EIN3/EIL gene family of DH poplar was analyzed and functionally characterized, which provides a theoretical basis for the future exploration of the EIN3/EIL gene function.

摘要

乙烯(ET)是一种重要的植物激素,调节植物的生长、发育和应激反应。乙烯不敏感 3/乙烯不敏感 3 样(EIN3/EIL)转录因子家族作为 ET 信号转导途径的关键调节因子,在调节 ET 响应基因的表达方面发挥着重要作用。尽管在许多物种中已经完成了 EIN3/EIL 家族成员的研究,但它们在来自另一种二倍体 × (供体树,DT)培养物的 DH 杨树上的作用仍不清楚。在这项研究中,共鉴定出 DH 杨树基因组中的七个 EIN3/EIL 基因家族成员。对这些基因进行了基本的理化性质分析,并预测这些蛋白质定位于细胞核。根据系统发育关系,EIN3/EIL 基因分为两组,同一组中的基因具有相似的基因结构和保守基序。根据转录组数据,分析了不同 DH 杨树植株顶芽中 EIN3/EIL 基因的表达模式。同时,通过 RT-qPCR 检测了不同 DH 植物不同组织中 、 、 和 基因的表达模式,包括顶芽、幼叶、功能叶、木质部、形成层和根。上述结果表明,不同 DH 植物不同组织中 基因的表达水平存在显著差异。最后,在 DT 中转基因过表达 基因,转基因植株表现出矮化表型,表明 基因参与调控杨树的生长发育。本研究对 DH 杨树的 EIN3/EIL 基因家族进行了分析和功能表征,为今后探索 EIN3/EIL 基因功能提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/20e544e1e342/ijms-25-04116-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/8c38aa7a84de/ijms-25-04116-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/d93218c94e9c/ijms-25-04116-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/31499f8466af/ijms-25-04116-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/5305a8723274/ijms-25-04116-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/0a95c3240b14/ijms-25-04116-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/9a52d3832fb4/ijms-25-04116-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/7c0359525f12/ijms-25-04116-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/4e9c6feab1ec/ijms-25-04116-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/20e544e1e342/ijms-25-04116-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/8c38aa7a84de/ijms-25-04116-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/d93218c94e9c/ijms-25-04116-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/31499f8466af/ijms-25-04116-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/5305a8723274/ijms-25-04116-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/0a95c3240b14/ijms-25-04116-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/9a52d3832fb4/ijms-25-04116-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/7c0359525f12/ijms-25-04116-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/4e9c6feab1ec/ijms-25-04116-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/090d/11012330/20e544e1e342/ijms-25-04116-g009.jpg

相似文献

1
Genome-Wide Identification and Analysis of the EIN3/EIL Transcription Factor Gene Family in Doubled Haploid (DH) Poplar.全基因组鉴定和分析双单倍体(DH)杨属 EIN3/EIL 转录因子基因家族。
Int J Mol Sci. 2024 Apr 8;25(7):4116. doi: 10.3390/ijms25074116.
2
Genome-wide identification and expression profiling of EIL gene family in woody plant representative poplar (Populus trichocarpa).木本植物代表性杨树(毛果杨)中EIL基因家族的全基因组鉴定与表达谱分析
Arch Biochem Biophys. 2017 Aug 1;627:30-45. doi: 10.1016/j.abb.2017.06.012. Epub 2017 Jun 15.
3
Genome-wide identification of the EIN3/EIL gene family in Ginkgo biloba and functional study of a GbEIL in the ethylene signaling pathway.银杏乙烯响应因子(EIN3/EIL)基因家族的全基因组鉴定及 GbEIL 在乙烯信号通路中的功能研究。
Gene. 2024 Nov 30;928:148800. doi: 10.1016/j.gene.2024.148800. Epub 2024 Jul 25.
4
Identification and Characterization of EIN3/EIL Transcription Factor Family Members in Lamb.鉴定和描述绵羊 EIN3/EIL 转录因子家族成员。
Int J Mol Sci. 2024 Nov 6;25(22):11928. doi: 10.3390/ijms252211928.
5
Investigation of the Transcription Factor Gene Family Members and Their Expression Levels in the Early Stage of Cotton Fiber Development.棉花纤维发育早期转录因子基因家族成员及其表达水平的研究
Plants (Basel). 2020 Jan 20;9(1):128. doi: 10.3390/plants9010128.
6
Genome-wide identification and analysis of the gene family in broomcorn millet ( L.).黍稷(Panicum miliaceum L.)中基因家族的全基因组鉴定与分析
Front Plant Sci. 2024 Aug 7;15:1440872. doi: 10.3389/fpls.2024.1440872. eCollection 2024.
7
Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization.在异源四倍体甘蓝型油菜中全基因组鉴定和分析 EIN3/EIL 基因家族揭示了其在多倍化过程中的潜在优势。
BMC Plant Biol. 2019 Mar 21;19(1):110. doi: 10.1186/s12870-019-1716-z.
8
Genome-wide identification of the EIN3/EIL transcription factor family and their responses under abiotic stresses in Medicago sativa.在紫花苜蓿中全基因组鉴定 EIN3/EIL 转录因子家族及其对非生物胁迫的响应。
BMC Plant Biol. 2024 Sep 30;24(1):898. doi: 10.1186/s12870-024-05588-2.
9
Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of family in Rosaceae.全基因组分析表明,高度的微同线性和纯化选择影响蔷薇科家族的进化。
PeerJ. 2017 May 31;5:e3400. doi: 10.7717/peerj.3400. eCollection 2017.
10
Origin, Expansion, and Divergence of ETHYLENE-INSENSITIVE 3 (EIN3)/EIN3-LIKE Transcription Factors During Streptophytes Evolution.链形植物进化过程中乙烯不敏感3(EIN3)/EIN3样转录因子的起源、扩张及分化
Front Plant Sci. 2022 May 13;13:858477. doi: 10.3389/fpls.2022.858477. eCollection 2022.

本文引用的文献

1
A painless way to customize Circos plot: From data preparation to visualization using TBtools.一种定制Circos图的无痛方法:从数据准备到使用TBtools进行可视化
Imeta. 2022 Jul 4;1(3):e35. doi: 10.1002/imt2.35. eCollection 2022 Sep.
2
Genome-Wide Identification and Expression Analysis of the SQUAMOSA Promoter-Binding Protein-like () Transcription Factor Family in .拟南芥 SQUAMOSA 启动子结合蛋白样(SPL)转录因子家族的全基因组鉴定和表达分析
Int J Mol Sci. 2023 Dec 20;25(1):97. doi: 10.3390/ijms25010097.
3
ETHYLENE INSENSITIVE3/EIN3-LIKE1 modulate FLOWERING LOCUS C expression via histone demethylase interaction.
乙烯不敏感 3/EIN3 样 1 通过组蛋白去甲基酶相互作用调节开花时间基因 C 的表达。
Plant Physiol. 2023 Jul 3;192(3):2290-2300. doi: 10.1093/plphys/kiad131.
4
InterPro in 2022.InterPro 在 2022 年。
Nucleic Acids Res. 2023 Jan 6;51(D1):D418-D427. doi: 10.1093/nar/gkac993.
5
Ethylene Activates the -/EIL1 Signaling Pathway in Tapetum and Disturbs Anther Development in .乙烯激活绒毡层中的-β/ EIL1 信号通路并扰乱 . 的花药发育。
Cells. 2022 Oct 10;11(19):3177. doi: 10.3390/cells11193177.
6
Coordinately regulated transcription factors EIN3/EIL1 and MYCs in ethylene and jasmonate signaling interact with the same domain of MED25.乙烯和茉莉酸信号传导中协调调控的转录因子 EIN3/EIL1 和 MYCs 与 MED25 的相同结构域相互作用。
Biosci Biotechnol Biochem. 2022 Sep 23;86(10):1405-1412. doi: 10.1093/bbb/zbac119.
7
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models.DeepLoc 2.0:使用蛋白质语言模型进行多标签亚细胞定位预测。
Nucleic Acids Res. 2022 Jul 5;50(W1):W228-W234. doi: 10.1093/nar/gkac278.
8
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.从头组装、注释和 26 个不同玉米基因组的比较分析。
Science. 2021 Aug 6;373(6555):655-662. doi: 10.1126/science.abg5289.
9
MEGA11: Molecular Evolutionary Genetics Analysis Version 11.MEGA11:分子进化遗传学分析版本 11。
Mol Biol Evol. 2021 Jun 25;38(7):3022-3027. doi: 10.1093/molbev/msab120.
10
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.交互式生命树 (iTOL) v5:一个用于显示和注释系统发育树的在线工具。
Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. doi: 10.1093/nar/gkab301.