Yu Qiushi, Wang Nan, Tang Hui, Zhang JiaXi, Xu Rui, Liu Liantao
College of Mechanical and Electrical Engineering, Hebei Agricultural University, 071000 Baoding, China.
College of Foreign Languages, Hebei Agricultural University, 071000 Baoding, China.
Plant Phenomics. 2024 Feb 12;6:0148. doi: 10.34133/plantphenomics.0148. eCollection 2024.
The root system plays a vital role in plants' ability to absorb water and nutrients. In situ root research offers an intuitive approach to exploring root phenotypes and their dynamics. Deep-learning-based root segmentation methods have gained popularity, but they require large labeled datasets for training. This paper presents an expansion method for in situ root datasets using an improved CycleGAN generator. In addition, spatial-coordinate-based target background separation method is proposed, which solves the issue of background pixel variations caused by generator errors. Compared to traditional threshold segmentation methods, this approach demonstrates superior speed, accuracy, and stability. Moreover, through time-division soil image acquisition, diverse culture medium can be replaced in in situ root images, thereby enhancing dataset versatility. After validating the performance of the Improved_UNet network on the augmented dataset, the optimal results show a 0.63% increase in mean intersection over union, 0.41% in F1, and 0.04% in accuracy. In terms of generalization performance, the optimal results show a 33.6% increase in mean intersection over union, 28.11% in F1, and 2.62% in accuracy. The experimental results confirm the feasibility and practicality of the proposed dataset augmentation strategy. In the future, we plan to combine normal mapping with rendering software to achieve more accurate shading simulations of in situ roots. In addition, we aim to create a broader range of images that encompass various crop varieties and soil types.
根系在植物吸收水分和养分的能力中起着至关重要的作用。原位根系研究为探索根系表型及其动态提供了一种直观的方法。基于深度学习的根系分割方法已受到广泛关注,但它们需要大量带标签的数据集进行训练。本文提出了一种使用改进的CycleGAN生成器对原位根系数据集进行扩充的方法。此外,还提出了基于空间坐标的目标背景分离方法,该方法解决了由生成器误差导致的背景像素变化问题。与传统的阈值分割方法相比,该方法在速度、准确性和稳定性方面表现更优。此外,通过时分土壤图像采集,可以在原位根系图像中更换不同的培养基,从而提高数据集的通用性。在扩充后的数据集上验证了Improved_UNet网络的性能后,最优结果显示平均交并比提高了0.63%,F1提高了0.41%,准确率提高了0.04%。在泛化性能方面,最优结果显示平均交并比提高了33.6%,F1提高了28.11%,准确率提高了2.62%。实验结果证实了所提出的数据集扩充策略的可行性和实用性。未来,我们计划将法线贴图与渲染软件相结合,以实现对原位根系更精确的阴影模拟。此外,我们旨在创建涵盖各种作物品种和土壤类型的更广泛的图像。