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通过宏基因组学分析探索红树林沉积物中未开发的细菌群落和潜在的聚丙烯降解酶。

Exploring untapped bacterial communities and potential polypropylene-degrading enzymes from mangrove sediment through metagenomics analysis.

作者信息

Pawano Onnipa, Jenpuntarat Nuttarin, Streit Wolfgang R, Pérez-García Pablo, Pongtharangkul Thunyarat, Phinyocheep Pranee, Thayanukul Parinda, Euanorasetr Jirayut, Intra Bungonsiri

机构信息

Department of Biotechnology, Faculty of Science, Mahidol University, Bangkok, Thailand.

Mahidol University and Osaka Collaborative Research Center on Bioscience and Biotechnology, Bangkok, Thailand.

出版信息

Front Microbiol. 2024 Apr 4;15:1347119. doi: 10.3389/fmicb.2024.1347119. eCollection 2024.

Abstract

The versatility of plastic has resulted in huge amounts being consumed annually. Mismanagement of post-consumption plastic material has led to plastic waste pollution. Biodegradation of plastic by microorganisms has emerged as a potential solution to this problem. Therefore, this study aimed to investigate the microbial communities involved in the biodegradation of polypropylene (PP). Mangrove soil was enriched with virgin PP sheets or chemically pretreated PP comparing between 2 and 4 months enrichment to promote the growth of bacteria involved in PP biodegradation. The diversity of the resulting microbial communities was accessed through 16S metagenomic sequencing. The results indicated that Xanthomonadaceae, unclassified Gaiellales, and Nocardioidaceae were promoted during the enrichment. Additionally, shotgun metagenomics was used to investigate enzymes involved in plastic biodegradation. The results revealed the presence of various putative plastic-degrading enzymes in the mangrove soil, including alcohol dehydrogenase, aldehyde dehydrogenase, and alkane hydroxylase. The degradation of PP plastic was determined using Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy (ATR-FTIR), Scanning Electron Microscopy (SEM), and Water Contact Angle measurements. The FTIR spectra showed a reduced peak intensity of enriched and pretreated PP compared to the control. SEM images revealed the presence of bacterial biofilms as well as cracks on the PP surface. Corresponding to the FTIR and SEM analysis, the water contact angle measurement indicated a decrease in the hydrophobicity of PP and pretreated PP surface during the enrichment.

摘要

塑料的多功能性导致其年消耗量巨大。消费后塑料材料的管理不善导致了塑料废物污染。微生物对塑料的生物降解已成为解决这一问题的潜在方案。因此,本研究旨在调查参与聚丙烯(PP)生物降解的微生物群落。用原始PP片材或化学预处理的PP对红树林土壤进行富集,比较2至4个月的富集时间,以促进参与PP生物降解的细菌生长。通过16S宏基因组测序来分析所得微生物群落的多样性。结果表明,富集过程中黄单胞菌科、未分类的盖尔菌目和诺卡氏菌科得到了促进。此外,采用鸟枪法宏基因组学研究参与塑料生物降解的酶。结果显示红树林土壤中存在各种假定的塑料降解酶,包括乙醇脱氢酶、醛脱氢酶和烷烃羟化酶。使用衰减全反射傅里叶变换红外光谱(ATR-FTIR)、扫描电子显微镜(SEM)和水接触角测量来测定PP塑料的降解情况。FTIR光谱显示,与对照相比,富集和预处理的PP的峰强度降低。SEM图像显示PP表面存在细菌生物膜以及裂缝。与FTIR和SEM分析结果一致,水接触角测量表明,富集过程中PP和预处理PP表面的疏水性降低。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a4a/11024650/7f74184945d0/fmicb-15-1347119-g007.jpg

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