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来自圈养加勒比刺龙虾肝胰腺的分离株K2014767的全基因组。

Complete genome of isolate K2014767 from the hepatopancreas of captive Caribbean spiny lobster ().

作者信息

Rose Divya, Bennett Hannah, Dill-Okubo Jennifer, Francis-Floyd Ruth, Camus Alvin C, Waldbieser Geoffrey C, Griffin Matt J

机构信息

Department of Pathobiology and Population Medicine, College of Veterinary Medicine, Mississippi State University, Stoneville, Mississippi, USA.

School of Forest, Fisheries, and Geomatics Sciences, University of Florida, Gainesville, Florida, USA.

出版信息

Microbiol Resour Announc. 2024 Jun 11;13(6):e0115623. doi: 10.1128/mra.01156-23. Epub 2024 Apr 22.

DOI:10.1128/mra.01156-23
PMID:38647329
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11237420/
Abstract

The complete genome sequence is reported for isolate K2014767, isolated from a captive Caribbean spiny lobster () during a species-specific mortality event in a public display aquarium in the United States.

摘要

已公布分离株K2014767的全基因组序列,该分离株是在美国一个公共展示水族馆发生特定物种死亡事件期间,从一只圈养的加勒比刺龙虾()中分离得到的。

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本文引用的文献

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CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database.CARD 2023:在全面抗生素耐药性数据库中进行扩展的策展、对机器学习的支持以及耐药组预测。
Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. doi: 10.1093/nar/gkac920.
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Vibrio and major commercially important vibriosis diseases in decapod crustaceans.弧菌与十足目甲壳类动物中主要的具有重要商业意义的弧菌病。
J Invertebr Pathol. 2021 May;181:107527. doi: 10.1016/j.jip.2020.107527. Epub 2021 Jan 3.
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Genome survey sequencing of the Caribbean spiny lobster : Genome size, nuclear rRNA operon, repetitive elements, and microsatellite discovery.加勒比刺龙虾的基因组调查测序:基因组大小、核 rRNA 操纵子、重复元件及微卫星发现
PeerJ. 2020 Dec 17;8:e10554. doi: 10.7717/peerj.10554. eCollection 2020.
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: a serious pathogen of fish and invertebrates in mariculture.:海水养殖中鱼类和无脊椎动物的一种严重病原体。
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NanoPack: visualizing and processing long-read sequencing data.NanoPack:可视化和处理长读测序数据。
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu:通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
8
Caribbean Spiny Lobster Fishery Is Underpinned by Trophic Subsidies from Chemosynthetic Primary Production.加勒比刺龙虾渔业依赖化能合成初级生产的营养补助。
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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