Wu Ruihua, Li Yuxin, Wang Lin, Li Zitian, Wu Runbin, Xu Kehang, Liu Yixin
College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Melbourne School of Design, The University of Melbourne, Parkville, VIC 3010, Australia.
Molecules. 2024 Apr 17;29(8):1823. doi: 10.3390/molecules29081823.
The B-box proteins (BBXs) encode a family of zinc-finger transcription factors that regulate the plant circadian rhythm and early light morphogenesis. The double B-box () family is in the class of the B-box family, which contains two conserved B-box domains and lacks a CCT (CO, CO-like and TOC1) motif. In this study, the identity, classification, structures, conserved motifs, chromosomal location, elements, duplication events, and expression profiles of the genes were analyzed in the woody model plant . Here, 12 genes (-) were identified and classified into four distinct groups, and all of them were homogeneously spread among eight out of seventeen poplar chromosomes. The collinearity analysis of the DBB family genes from and two other species ( and ) indicated that segmental duplication gene pairs and high-level conservation were identified. The analysis of duplication events demonstrates an insight into the evolutionary patterns of genes. The previously published transcriptome data showed that genes represented distinct expression patterns in various tissues at different stages. In addition, it was speculated that several are involved in the responsive to drought stress, light/dark, and ABA and MeJA treatments, which implied that they might function in abiotic stress and phytohormone responses. In summary, our results contribute to the further understanding of the DBB family and provide a reference for potential functional studies of genes in .
B-box蛋白(BBXs)编码一类锌指转录因子,可调节植物的昼夜节律和早期光形态建成。双B-box(DBB)家族属于B-box家族,该家族包含两个保守的B-box结构域,且缺乏CCT(CONSTANS、CONSTANS-like和TIMING OF CAB EXPRESSION1)基序。在本研究中,对木本模式植物杨树中DBB基因的特性、分类、结构、保守基序、染色体定位、顺式作用元件、复制事件及表达谱进行了分析。在此,共鉴定出12个DBB基因(PtrDBB1-12)并将其分为四个不同的组,它们均匀分布在17条杨树染色体中的8条上。对杨树与其他两个物种(拟南芥和毛果杨)的DBB家族基因进行共线性分析,结果表明存在片段重复基因对且具有高度保守性。对复制事件的分析揭示了DBB基因的进化模式。先前发表的转录组数据表明,DBB基因在不同阶段的各种组织中呈现出不同的表达模式。此外,据推测,一些DBB基因参与了对干旱胁迫、光/暗以及脱落酸和茉莉酸甲酯处理的响应,这表明它们可能在非生物胁迫和植物激素应答中发挥作用。总之,我们的研究结果有助于进一步了解DBB家族,并为杨树中DBB基因的潜在功能研究提供参考。