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CheXmask:一个用于多中心胸部 X 光图像的大规模解剖分割掩模数据集。

CheXmask: a large-scale dataset of anatomical segmentation masks for multi-center chest x-ray images.

机构信息

Institute for Signals, Systems and Computational Intelligence, sinc(i) CONICET-UNL, Santa Fe, CP 3002, Argentina.

Health Informatics Department at Hospital Italiano de Buenos Aires, Buenos Aires, CP 1199, Argentina.

出版信息

Sci Data. 2024 May 17;11(1):511. doi: 10.1038/s41597-024-03358-1.

DOI:10.1038/s41597-024-03358-1
PMID:38760409
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11101488/
Abstract

The development of successful artificial intelligence models for chest X-ray analysis relies on large, diverse datasets with high-quality annotations. While several databases of chest X-ray images have been released, most include disease diagnosis labels but lack detailed pixel-level anatomical segmentation labels. To address this gap, we introduce an extensive chest X-ray multi-center segmentation dataset with uniform and fine-grain anatomical annotations for images coming from five well-known publicly available databases: ChestX-ray8, CheXpert, MIMIC-CXR-JPG, Padchest, and VinDr-CXR, resulting in 657,566 segmentation masks. Our methodology utilizes the HybridGNet model to ensure consistent and high-quality segmentations across all datasets. Rigorous validation, including expert physician evaluation and automatic quality control, was conducted to validate the resulting masks. Additionally, we provide individualized quality indices per mask and an overall quality estimation per dataset. This dataset serves as a valuable resource for the broader scientific community, streamlining the development and assessment of innovative methodologies in chest X-ray analysis.

摘要

成功开发用于胸部 X 射线分析的人工智能模型依赖于具有高质量注释的大型、多样化数据集。虽然已经发布了几个胸部 X 射线图像数据库,但大多数数据库都包含疾病诊断标签,但缺乏详细的像素级解剖分割标签。为了解决这一差距,我们引入了一个广泛的胸部 X 射线多中心分割数据集,具有来自五个知名公开可用数据库的统一和细粒度解剖注释:ChestX-ray8、CheXpert、MIMIC-CXR-JPG、Padchest 和 VinDr-CXR,总共产生了 657566 个分割掩模。我们的方法利用 HybridGNet 模型来确保所有数据集的分割结果一致且具有高质量。我们进行了严格的验证,包括专家医生评估和自动质量控制,以验证生成的掩模。此外,我们还为每个掩模提供了个性化的质量指数,并为每个数据集提供了整体质量估计。这个数据集为更广泛的科学界提供了有价值的资源,简化了胸部 X 射线分析中创新方法的开发和评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/5af00e4149b1/41597_2024_3358_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/f9a6997501de/41597_2024_3358_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/9e9276bd7308/41597_2024_3358_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/c6b3237855e3/41597_2024_3358_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/6da01d40e00a/41597_2024_3358_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/99d555265eec/41597_2024_3358_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/9b3c154b9170/41597_2024_3358_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/56b0281824ae/41597_2024_3358_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/5af00e4149b1/41597_2024_3358_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/f9a6997501de/41597_2024_3358_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/9e9276bd7308/41597_2024_3358_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/5d7f7540e425/41597_2024_3358_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/c6b3237855e3/41597_2024_3358_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/6da01d40e00a/41597_2024_3358_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/99d555265eec/41597_2024_3358_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/9b3c154b9170/41597_2024_3358_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/56b0281824ae/41597_2024_3358_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16f5/11101488/5af00e4149b1/41597_2024_3358_Fig9_HTML.jpg

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本文引用的文献

1
Improving Anatomical Plausibility in Medical Image Segmentation via Hybrid Graph Neural Networks: Applications to Chest X-Ray Analysis.通过混合图神经网络提高医学图像分割的解剖合理性:在胸部 X 光分析中的应用。
IEEE Trans Med Imaging. 2023 Feb;42(2):546-556. doi: 10.1109/TMI.2022.3224660. Epub 2023 Feb 2.
2
Addressing fairness in artificial intelligence for medical imaging.解决医学影像人工智能中的公平性问题。
Nat Commun. 2022 Aug 6;13(1):4581. doi: 10.1038/s41467-022-32186-3.
3
VinDr-CXR: An open dataset of chest X-rays with radiologist's annotations.
VinDr-CXR:一个带有放射科医生标注的胸部 X 光数据集。
Sci Data. 2022 Jul 20;9(1):429. doi: 10.1038/s41597-022-01498-w.
4
PadChest: A large chest x-ray image dataset with multi-label annotated reports.PadChest:一个大型胸部 X 射线图像数据集,带有多标签注释报告。
Med Image Anal. 2020 Dec;66:101797. doi: 10.1016/j.media.2020.101797. Epub 2020 Aug 20.
5
Post-DAE: Anatomically Plausible Segmentation via Post-Processing With Denoising Autoencoders.后 DAE:基于去噪自动编码器的后处理的解剖合理分割。
IEEE Trans Med Imaging. 2020 Dec;39(12):3813-3820. doi: 10.1109/TMI.2020.3005297. Epub 2020 Nov 30.
6
Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis.医学影像数据集的性别失衡会导致计算机辅助诊断的分类器产生偏差。
Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12592-12594. doi: 10.1073/pnas.1919012117. Epub 2020 May 26.
7
Learning deformable registration of medical images with anatomical constraints.学习带有解剖约束的医学图像的可变形配准。
Neural Netw. 2020 Apr;124:269-279. doi: 10.1016/j.neunet.2020.01.023. Epub 2020 Jan 30.
8
A survey on deep learning in medical image analysis.深度学习在医学图像分析中的应用研究综述。
Med Image Anal. 2017 Dec;42:60-88. doi: 10.1016/j.media.2017.07.005. Epub 2017 Jul 26.
9
Reverse Classification Accuracy: Predicting Segmentation Performance in the Absence of Ground Truth.反向分类准确率:在缺乏真实数据的情况下预测分割性能。
IEEE Trans Med Imaging. 2017 Aug;36(8):1597-1606. doi: 10.1109/TMI.2017.2665165. Epub 2017 Apr 17.
10
Deep Learning in Medical Image Analysis.医学图像分析中的深度学习
Annu Rev Biomed Eng. 2017 Jun 21;19:221-248. doi: 10.1146/annurev-bioeng-071516-044442. Epub 2017 Mar 9.