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超越三螺旋:类胶原蛋白肽分层组装空间的探索

Beyond the Triple Helix: Exploration of the Hierarchical Assembly Space of Collagen-like Peptides.

作者信息

Yu Le Tracy, Kreutzberger Mark A B, Hancu Maria C, Bui Thi H, Farsheed Adam C, Egelman Edward H, Hartgerink Jeffrey D

机构信息

Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA.

Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA, 22903, USA.

出版信息

bioRxiv. 2024 May 15:2024.05.14.594194. doi: 10.1101/2024.05.14.594194.

Abstract

The design of self-assembling peptides has garnered significant attention in scientific research. While alpha-helical assemblies have been extensively studied, exploration of polyproline type II (PPII) helices, such as those found in collagen, remains relatively limited. In this study, we focused on understanding the sequence-structure relationship in hierarchical assemblies of collagen-like peptides, using defense collagen SP-A as a model. By dissecting the sequence derived from SP-A and synthesizing short collagen-like peptides, we successfully constructed a discrete bundle of hollow triple helices. Mutation studies pinpointed amino acid sequences, including hydrophobic and charged residues that are critical for oligomer formation. These insights guided the design of collagen-like peptides, resulting in the formation of diverse quaternary structures, including discrete and heterogenous bundled oligomers, 2D nanosheets, and pH-responsive nanoribbons. Our study represents a significant advancement in the understanding and harnessing of collagen higher-order assemblies beyond the triple helix.

摘要

自组装肽的设计在科学研究中备受关注。虽然α-螺旋组装体已得到广泛研究,但对诸如胶原蛋白中发现的多聚脯氨酸II型(PPII)螺旋的探索仍然相对有限。在本研究中,我们以防御性胶原蛋白SP-A为模型,专注于理解类胶原蛋白肽分层组装中的序列-结构关系。通过剖析源自SP-A的序列并合成短的类胶原蛋白肽,我们成功构建了离散的中空三螺旋束。突变研究确定了对寡聚体形成至关重要的氨基酸序列,包括疏水和带电荷的残基。这些见解指导了类胶原蛋白肽的设计,导致形成了多种四级结构,包括离散的和异质的束状寡聚体、二维纳米片和pH响应性纳米带。我们的研究代表了在理解和利用超越三螺旋的胶原蛋白高阶组装方面的重大进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a087/11118445/b219bef3981b/nihpp-2024.05.14.594194v1-f0001.jpg

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