Suppr超能文献

基于梯度的参数优化方法开发的匹配两种不同动作电位波形的 hiPSC-CMs 细胞特异性模型。

Cell-specific models of hiPSC-CMs developed by the gradient-based parameter optimization method fitting two different action potential waveforms.

机构信息

Graduate School of Life Sciences, Ritsumeikan University, Kusatsu, Japan.

Department of Physiology, Shiga University of Medical Science, Otsu, Japan.

出版信息

Sci Rep. 2024 Jun 7;14(1):13086. doi: 10.1038/s41598-024-63413-0.

Abstract

Parameter optimization (PO) methods to determine the ionic current composition of experimental cardiac action potential (AP) waveform have been developed using a computer model of cardiac membrane excitation. However, it was suggested that fitting a single AP record in the PO method was not always successful in providing a unique answer because of a shortage of information. We found that the PO method worked perfectly if the PO method was applied to a pair of a control AP and a model output AP in which a single ionic current out of six current species, such as I, I, I, I, I or I was partially blocked in silico. When the target was replaced by a pair of experimental control and I-blocked records of APs generated spontaneously in human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs), the simultaneous fitting of the two waveforms by the PO method was hampered to some extent by the irregular slow fluctuations in the V recording and/or sporadic alteration in AP configurations in the hiPSC-CMs. This technical problem was largely removed by selecting stable segments of the records for the PO method. Moreover, the PO method was made fail-proof by running iteratively in identifying the optimized parameter set to reconstruct both the control and the I-blocked AP waveforms. In the lead potential analysis, the quantitative ionic mechanisms deduced from the optimized parameter set were totally consistent with the qualitative view of ionic mechanisms of AP so far described in physiological literature.

摘要

参数优化(PO)方法已被开发用于确定实验性心脏动作电位(AP)波形的离子电流组成,该方法使用心脏膜兴奋的计算机模型。然而,有人认为,由于信息量不足,在 PO 方法中拟合单个 AP 记录并不总是能提供唯一的答案。我们发现,如果将 PO 方法应用于一对对照 AP 和模型输出 AP,其中在计算机中部分阻断了六种电流种类中的一种离子电流,例如 I、I、I、I、I 或 I,那么 PO 方法就能完美地工作。当目标被替换为一对在人诱导多能干细胞衍生的心肌细胞(hiPSC-CMs)中自发产生的实验对照和 I 阻断的 AP 记录时,由于 V 记录中的不规则缓慢波动和/或 hiPSC-CMs 中的 AP 构型的偶尔变化,PO 方法对两个波形的同时拟合在某种程度上受到阻碍。通过为 PO 方法选择记录的稳定段,这个技术问题在很大程度上得到了解决。此外,通过迭代运行以识别优化参数集来重建对照和 I 阻断的 AP 波形,使 PO 方法变得万无一失。在引导潜力分析中,从优化参数集中推导出的定量离子机制与迄今为止在生理文献中描述的 AP 离子机制的定性观点完全一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a27f/11161598/0960fa838de2/41598_2024_63413_Fig1_HTML.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验