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sp. nov.,分离自南海海马冷泉。

sp. nov., isolated from the Haima cold seep, South China Sea.

机构信息

CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, PR China.

School of Marine Sciences, Guangxi University, Nanning 530004, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Jun;74(6). doi: 10.1099/ijsem.0.006428.

Abstract

A Gram-stain-negative, orange-yellow, rod-shaped bacterium, designated strain SCSIO 19198, was isolated from sediment of the Haima cold seep in the South China Sea, PR China. The strain was aerobic and non-motile. Growth of strain SCSIO 19198 occurred at pH 7-9 (optimum, pH 7), 15-37 °C (optimum, 25-32 °C) and with 3-8 % (w/v) NaCl (optimum, 3-6 % NaCl). Phylogenetic analyses based on 16S rRNA sequences revealed that strain SCSIO 19198 belonged to the genus , having the highest similarity to HD-3 (98.35 %), followed by KYW589 (95.17 %) and GYP-24 (94.89 %). The DNA G+C content was 35.92 mol%. The average nucleotide identity value between the genome of strain SCSIO 19198 and that of HD-3 was 88.49 %. The digital DNA-DNA hybridization value between strain SCSIO 19198 and HD-3 was 36 %. The major fatty acids (>10 %) of strain SCSIO 19198 were iso-C, iso-C G, summed feature 3 (C 6/C ω7) and anteiso-C. MK-6 was the only detected respiratory quinone. The polar lipids of strain SCSIO 19198 included phosphatidylethanolamine, two aminolipids, glycolipid and two unidentified lipids. The phenotypic, phylogenetic, chemotaxonomic and genomic data clearly suggest that strain SCSIO 19198 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is SCSIO 19198 (=MCCC 1K08674=KCTC 102078).

摘要

一株革兰氏阴性、橙黄色、杆状细菌,被命名为 SCSIO 19198 菌株,从中国南海海马冷泉沉积物中分离得到。该菌株为需氧非运动性细菌。SCSIO 19198 菌株在 pH7-9(最佳 pH7)、15-37°C(最佳 25-32°C)和 3-8%(w/v)NaCl(最佳 3-6%NaCl)条件下生长。基于 16S rRNA 序列的系统发育分析表明,SCSIO 19198 菌株属于 属,与 HD-3(98.35%)的相似度最高,其次是 KYW589(95.17%)和 GYP-24(94.89%)。DNA G+C 含量为 35.92mol%。与 HD-3 基因组相比,SCSIO 19198 菌株的平均核苷酸同一性值为 88.49%。SCSIO 19198 菌株与 HD-3 之间的数字 DNA-DNA 杂交值为 36%。SCSIO 19198 菌株的主要脂肪酸(>10%)为 iso-C、iso-C G、summed feature 3(C6/C ω7)和 anteiso-C。MK-6 是唯一检测到的呼吸醌。SCSIO 19198 菌株的极性脂包括磷脂酰乙醇胺、两种氨基脂、糖脂和两种未鉴定的脂。SCSIO 19198 菌株的表型、系统发育、化学分类和基因组数据清楚地表明,该菌株代表了 属的一个新种,建议将其命名为 sp. nov.。模式菌株为 SCSIO 19198(=MCCC 1K08674=KCTC 102078)。

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