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中国武汉分离的一株新型分枝杆菌噬菌体 WXIN 的全基因组序列

Complete genome of a novel mycobacteriophage WXIN isolated in Wuhan, China.

机构信息

Pilot Base of Food Microbial Resources Utilization of Hubei Province, School of Life Science and Technology, Wuhan Polytechnic University, Wuhan, 430023, China.

Department of Laboratory Medicine, Wuhan Children's Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430019, China.

出版信息

BMC Genom Data. 2024 Jun 18;25(1):62. doi: 10.1186/s12863-024-01244-8.

Abstract

OBJECTIVES

The rising of antibiotic resistance has sparked a renewed interest in mycobacteriophage as alternative therapeutic strategies against mycobacterial infections. So far, the vast majority of mycobacteriophages have been isolated using the model species Mycobacterium smegmatis, implying an overwhelming majority of mycobacteriophages in the environment remain uncultured, unclassified, and their specific hosts and infection strategies are still unknown. This study was undertaken to isolate and characterize novel mycobacteriophages targeting Mycobacterium septicum.

DATA DESCRIPTION

Here a novel mycobacteriophage WXIN against M. septicum was isolated from soil samples in Wuhan, China. Whole genome analysis indicates that the phage genome consists of 115,158 bp with a GC content of 61.9%. Of the 260 putative open reading frames, 46 may be associated with phage packaging, structure, lysis, lysogeny, genome modification/replication, and other functional roles. The limited genome-wide similarity, along with phylogenetic trees constructed based on viral proteome and orthologous genes show that phage WXIN represents a novel cluster distantly related to cluster J mycobacteriophages (genus Omegavirus). Overall, these results provide novel insights into the genomic properties of mycobacteriophages, highlighting the great genetic diversity of mycobacteriophages in relation to their hosts.

摘要

目的

抗生素耐药性的兴起激发了人们对分枝杆菌噬菌体作为治疗分枝杆菌感染的替代策略的重新关注。到目前为止,绝大多数分枝杆菌噬菌体都是使用模式物种耻垢分枝杆菌进行分离的,这意味着环境中绝大多数分枝杆菌噬菌体仍未被培养、分类,其特定宿主和感染策略仍不清楚。本研究旨在分离和鉴定针对化脓分枝杆菌的新型分枝杆菌噬菌体。

数据描述

本研究从中国武汉的土壤样本中分离到了一种针对化脓分枝杆菌的新型分枝杆菌噬菌体 WXIN。全基因组分析表明,噬菌体基因组由 115158bp 组成,GC 含量为 61.9%。在 260 个可能的开放阅读框中,有 46 个可能与噬菌体包装、结构、裂解、溶原、基因组修饰/复制和其他功能角色有关。有限的全基因组相似性,以及基于病毒蛋白质组和同源基因构建的系统发育树表明,噬菌体 WXIN 代表了一个与 J 群分枝杆菌噬菌体(属 Omegavirus)远亲的新簇。总的来说,这些结果为分枝杆菌噬菌体的基因组特性提供了新的见解,突出了分枝杆菌噬菌体与其宿主之间的巨大遗传多样性。

相似文献

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本文引用的文献

1
Mycobacterium smegmatis: The Vanguard of Mycobacterial Research.耻垢分枝杆菌:分枝杆菌研究的先锋。
J Bacteriol. 2023 Jan 26;205(1):e0033722. doi: 10.1128/jb.00337-22. Epub 2023 Jan 4.
10
ViPTree: the viral proteomic tree server.ViPTree:病毒蛋白质组树服务器。
Bioinformatics. 2017 Aug 1;33(15):2379-2380. doi: 10.1093/bioinformatics/btx157.

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