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属中的成员被推断为好氧土壤中甲烷氧化的主要贡献者,这些土壤来自淡水湿地。

Members of the Genus Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland.

机构信息

Department of Microbiology, The Ohio State University, Columbus, Ohio, USA.

Department of Soil and Crop Sciences, Colorado State University, Fort Collins, Colorado, USA.

出版信息

mBio. 2018 Nov 6;9(6):e00815-18. doi: 10.1128/mBio.00815-18.

Abstract

Microbial carbon degradation and methanogenesis in wetland soils generate a large proportion of atmospheric methane, a highly potent greenhouse gas. Despite their potential to mitigate greenhouse gas emissions, knowledge about methane-consuming methanotrophs is often limited to lower-resolution single-gene surveys that fail to capture the taxonomic and metabolic diversity of these microorganisms in soils. Here our objective was to use genome-enabled approaches to investigate methanotroph membership, distribution, and activity across spatial and seasonal gradients in a freshwater wetland near Lake Erie. 16S rRNA gene analyses demonstrated that members of the methanotrophic were dominant, with the dominance largely driven by the relative abundance of four taxa, and enriched in oxic surface soils. Three methanotroph genomes from assembled soil metagenomes were assigned to the genus and represented the most abundant methanotrophs across the wetland. Paired metatranscriptomes confirmed that these Old Woman Creek (OWC) members accounted for nearly all the aerobic methanotrophic activity across two seasons. In addition to having the capacity to couple methane oxidation to aerobic respiration, these new genomes encoded denitrification potential that may sustain energy generation in soils with lower dissolved oxygen concentrations. We further show that members that were closely related to the OWC members were present in many other high-methane-emitting freshwater and soil sites, suggesting that this lineage could participate in methane consumption in analogous ecosystems. This work contributes to the growing body of research suggesting that may represent critical mediators of methane fluxes in freshwater saturated sediments and soils worldwide. Here we used soil metagenomics and metatranscriptomics to uncover novel members within the genus We denote these closely related genomes as members of the lineage OWC Despite the incredibly high microbial diversity in soils, here we present findings that unexpectedly showed that methane cycling was primarily mediated by a single genus for both methane production (" Methanothrix paradoxum") and methane consumption (OWC ). Metatranscriptomic analyses revealed that decreased methanotrophic activity rather than increased methanogenic activity possibly contributed to the greater methane emissions that we had previously observed in summer months, findings important for biogeochemical methane models. Although members of this order have been cultivated for decades, multi-omic approaches continue to illuminate the methanotroph phylogenetic and metabolic diversity harbored in terrestrial and marine ecosystems.

摘要

湿地土壤中的微生物碳降解和产甲烷作用产生了大气中甲烷的很大一部分,甲烷是一种强效温室气体。尽管它们有潜力减少温室气体排放,但关于消耗甲烷的甲烷营养菌的知识通常仅限于低分辨率的单基因调查,这些调查无法捕捉到土壤中这些微生物的分类和代谢多样性。在这里,我们的目标是使用基于基因组的方法来研究在伊利湖附近的一个淡水湿地中,空间和季节性梯度上的甲烷营养菌的成员、分布和活性。16S rRNA 基因分析表明,甲烷营养菌的成员占主导地位,这种优势主要是由四个分类群的相对丰度驱动的,并在氧化表面土壤中富集。从组装的土壤宏基因组中获得的三个甲烷营养菌基因组被分配到属中,并且代表了整个湿地中最丰富的甲烷营养菌。配对的宏转录组学证实,这些老妇溪(OWC)成员在两个季节中几乎占所有好氧甲烷营养活性。除了能够将甲烷氧化与好氧呼吸偶联外,这些新基因组还编码反硝化潜力,这可能在溶解氧浓度较低的土壤中维持能量生成。我们还表明,与 OWC 成员密切相关的成员存在于许多其他高甲烷排放的淡水和土壤地点,这表明该谱系可能参与类似生态系统中的甲烷消耗。这项工作有助于越来越多的研究表明,可能代表全球淡水饱和沉积物和土壤中甲烷通量的关键调节因子。在这里,我们使用土壤宏基因组学和宏转录组学来揭示属内的新成员。我们将这些密切相关的基因组表示为 OWC 谱系的成员。尽管土壤中的微生物多样性极高,但我们的研究结果出人意料地表明,甲烷循环主要由一个单一的属介导,该属既参与甲烷的产生(“ Methanothrix paradoxum”),也参与甲烷的消耗(OWC)。宏转录组学分析表明,减少的甲烷营养活性而不是增加的产甲烷活性可能导致我们之前在夏季观察到的更大的甲烷排放,这一发现对生物地球化学甲烷模型很重要。尽管这个目 的成员已经被培养了几十年,但多组学方法继续阐明陆地和海洋生态系统中所蕴藏的甲烷营养菌的系统发育和代谢多样性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/25aa/6222125/ccf885626de8/mbo0051841580001.jpg

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