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从携带多种毒力因子的临床样本中分离出两个新物种,即新种和新种。

Two novel species, sp. nov. and sp. nov., recovered from clinical samples carrying multiple virulence factors.

作者信息

He Yanling, Xiao Yuling, Feng Yu, Wu Shikai, Wei Li, Zong Zhiyong

机构信息

Center of Infectious Diseases, West China Hospital, Sichuan University, Chengdu, China.

Division of Infectious Diseases, State Key Laboratory of Biotherapy, Chengdu, China.

出版信息

Microbiol Spectr. 2024 Aug 6;12(8):e0029224. doi: 10.1128/spectrum.00292-24. Epub 2024 Jun 25.

Abstract

Two strains 170198 and 170250 were isolated from clinical blood samples from distinct patients in a hospital in Chengdu, China, in 2022. These isolates were subjected to whole-genome sequencing. A phylogenomic tree based on 2,096 concatenated core genes showed that the two strains were clustered within the genus . The average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between each of the two strains and type strains of all currently known species were determined. The two strains belonged to two novel species as the highest ANI and DDH values with type strains of all currently known species below the cutoff for species demarcation (96% for ANI and 70% for DDH). Then the physiological and biochemical studies demonstrated that biochemical features and the profile of whole fatty acids of strains 170198 and 170250 were largely consistent with those known species. Nevertheless, the two novel species can be differentiated from all other species by certain biochemical characteristics. In conclusion, 170198 and 170250 represent two novel species of the genus , for which we propose sp. nov. and sp. nov., as the species names. The type strains of sp. nov., and sp. nov. are 170198 (=GDMCC 1.3549=JCM 35826) and 170250 (=GDMCC 1.3670=JCM 36189), respectively. The two novel species have clinical significance with the ability to cause bloodstream infections.IMPORTANCE is a group of bacteria comprising several common opportunistic pathogens and has a complicated taxonomy. Here, we reported two novel species. We demonstrated that the two novel species can be differentiated from other species by certain phenotypic characteristics and therefore provide information for designing tests for identification. We also showed that strains of the two novel species are able to cause human bloodstream infections and carry multiple virulence factors and therefore are of clinical significance. We highlight that the virulence of is less studied and warrants further exploration. We believe that the findings here are valuable for enhancing the appreciation toward , an important pathogen.

摘要

2022年,在中国成都一家医院,从不同患者的临床血液样本中分离出两株菌株170198和170250。对这些分离株进行了全基因组测序。基于2096个串联核心基因构建的系统发育树表明,这两株菌株聚集在该属内。测定了这两株菌株与所有已知物种的模式菌株之间的平均核苷酸同一性(ANI)和DNA-DNA杂交(DDH)值。由于这两株菌株与所有已知物种的模式菌株的最高ANI和DDH值均低于物种划分的阈值(ANI为96%,DDH为70%),因此它们属于两个新物种。随后的生理生化研究表明,菌株170198和170250的生化特征和全脂肪酸谱与已知物种基本一致。然而,这两个新物种可以通过某些生化特征与所有其他物种区分开来。总之,170198和170250代表该属的两个新物种,我们提议将其命名为sp. nov.和sp. nov.作为物种名称。sp. nov.和sp. nov.的模式菌株分别为170198(=GDMCC 1.3549=JCM 35826)和170250(=GDMCC 1.3670=JCM 36189)。这两个新物种具有引起血流感染的能力,具有临床意义。重要性该属细菌包含几种常见的机会性病原体,分类学复杂。在此,我们报告了两个新物种。我们证明这两个新物种可以通过某些表型特征与其他物种区分开来,因此为设计鉴定试验提供了信息。我们还表明,这两个新物种的菌株能够引起人类血流感染并携带多种毒力因子,因此具有临床意义。我们强调,对该属的毒力研究较少,值得进一步探索。我们相信,这里的发现对于提高对这一重要病原体的认识具有重要价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9db4/11302248/918d4c6070a6/spectrum.00292-24.f001.jpg

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