Yu Yue, van der Donk Wilfred A
Department of Chemistry and Howard Hughes Medical Institute, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States.
ACS Cent Sci. 2024 Jun 3;10(6):1242-1250. doi: 10.1021/acscentsci.4c00044. eCollection 2024 Jun 26.
A subset of nonribosomal peptide synthetases (NRPSs) and polyketide synthases (PKSs) are encoded in their biosynthetic gene clusters (BGCs) with enzymes annotated as lantibiotic dehydratases. The functions of these putative lantibiotic dehydratases remain unknown. Here, we characterize an NRPS-PKS BGC with a putative lantibiotic dehydratase from the bacterium (). Heterologous expression revealed several metabolites produced by the BGC, and the omission of selected biosynthetic enzymes revealed the biosynthetic pathway toward these compounds. The final product is a bisarginyl ureidopeptide with an enone electrophile. The putative lantibiotic dehydratase catalyzes peptide bond formation to a Thr that extends the peptide scaffold opposite to the NRPS and PKS biosynthetic direction. The condensation domain of the NRPS SnaA catalyzes the formation of a ureido group, and bioinformatics analysis revealed a distinct active site signature EHHXXHDG of ureido-generating condensation (C) domains. This work demonstrates that the annotated lantibiotic dehydratase serves as a separate amide bond-forming machinery in addition to the NRPS, and that the lantibiotic dehydratase enzyme family possesses diverse catalytic activities in the biosynthesis of both ribosomal and nonribosomal natural products.
非核糖体肽合成酶(NRPSs)和聚酮合酶(PKSs)的一个子集在其生物合成基因簇(BGCs)中编码,其相关酶被注释为羊毛硫抗生素脱水酶。这些假定的羊毛硫抗生素脱水酶的功能仍然未知。在这里,我们对来自细菌()的具有假定羊毛硫抗生素脱水酶的NRPS-PKS BGC进行了表征。异源表达揭示了该BGC产生的几种代谢物,而缺失选定的生物合成酶则揭示了这些化合物的生物合成途径。最终产物是一种带有烯酮亲电试剂的双精氨酰脲基肽。假定的羊毛硫抗生素脱水酶催化与苏氨酸形成肽键,该苏氨酸在与NRPS和PKS生物合成方向相反的方向上延伸肽支架。NRPS SnaA的缩合结构域催化脲基的形成,生物信息学分析揭示了脲基生成缩合(C)结构域独特的活性位点特征EHHXXHDG。这项工作表明,注释的羊毛硫抗生素脱水酶除了NRPS之外,还作为一种独立的酰胺键形成机制,并且羊毛硫抗生素脱水酶家族在核糖体和非核糖体天然产物的生物合成中具有多种催化活性。