Chen Long, Liu Guanqing, Zhang Tao
Jiangsu Key Laboratory of Crop Genomics and Molecular Breeding/Zhongshan Biological Breeding Laboratory/Key Laboratory of Plant Functional Genomics of the Ministry of Education, Agricultural College of Yangzhou University, Yangzhou, 225009 China.
Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Jiangsu Key Laboratory of Crop Genetics and Physiology, Yangzhou University, Yangzhou, 225009 China.
aBIOTECH. 2024 Feb 29;5(2):262-277. doi: 10.1007/s42994-023-00133-5. eCollection 2024 Jun.
Genome editing is a promising technique that has been broadly utilized for basic gene function studies and trait improvements. Simultaneously, the exponential growth of computational power and big data now promote the application of machine learning for biological research. In this regard, machine learning shows great potential in the refinement of genome editing systems and crop improvement. Here, we review the advances of machine learning to genome editing optimization, with emphasis placed on editing efficiency and specificity enhancement. Additionally, we demonstrate how machine learning bridges genome editing and crop breeding, by accurate key site detection and guide RNA design. Finally, we discuss the current challenges and prospects of these two techniques in crop improvement. By integrating advanced genome editing techniques with machine learning, progress in crop breeding will be further accelerated in the future.
基因组编辑是一种很有前景的技术,已被广泛应用于基础基因功能研究和性状改良。同时,计算能力和大数据的指数级增长推动了机器学习在生物学研究中的应用。在这方面,机器学习在优化基因组编辑系统和作物改良方面显示出巨大潜力。在此,我们综述了机器学习在基因组编辑优化方面的进展,重点是提高编辑效率和特异性。此外,我们展示了机器学习如何通过准确检测关键位点和设计引导RNA来架起基因组编辑与作物育种之间的桥梁。最后,我们讨论了这两种技术在作物改良中的当前挑战和前景。通过将先进的基因组编辑技术与机器学习相结合,未来作物育种将进一步加速。