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油菜( L.)中 SIMILAR to RCD ONE (SRO) 基因家族的全基因组鉴定揭示了它们在干旱胁迫响应中的作用。

Genome-wide identification of SIMILAR to RCD ONE (SRO) gene family in rapeseed ( L.) reveals their role in drought stress response.

机构信息

Guizhou Oil Crops Research Institute, Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou, China.

Qianxi'nan Academy of Agricultural and Forestry Sciences, Xingyi, Guizhou, China.

出版信息

Plant Signal Behav. 2024 Dec 31;19(1):2379128. doi: 10.1080/15592324.2024.2379128. Epub 2024 Jul 14.

DOI:10.1080/15592324.2024.2379128
PMID:39003725
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11249032/
Abstract

Rapeseed ( L.) is an important oilseed crop widely cultivated worldwide, and drought is the main environmental factor limiting its yield enhancement and the expansion of planted areas. SIMILAR TO RCD ONE () is a plant-specific small gene family that plays a crucial role in plant growth, development, and responses to abiotic stresses such as drought. However, the functional role of in rapeseed remains poorly understood. In this study, 19 were identified from the rapeseed genome, with 9, 10, 10, 18, and 20 members identified from the genomes of , , , , and , respectively. We then analyzed their sequence characteristics, phylogenetic relationships, gene structures, and conserved domains, and explored the collinearity relationships of the members in and . Next, we focused on the analysis of tissue expression and stress-responsive expression patterns of rapeseed members and examined their expression profiles under ABA, MeJA and water-deficit drought treatments using qPCR. Transcriptome data analysis and qPCR detection indicated that exhibit multiple stress-responsive expression patterns. and , which are likely to function through interactions with NAC transcription factors, were screened as major drought-regulated members. Our results provide a solid foundation for functional analysis of the role of the gene family in abiotic stress responses, especially drought stress responses, in rapeseed.

摘要

油菜(L.)是一种重要的油料作物,在全球范围内广泛种植,干旱是限制其产量提高和种植面积扩大的主要环境因素。与 RCD ONE()相似,是一个植物特异性的小基因家族,在植物的生长、发育和对非生物胁迫(如干旱)的响应中起着至关重要的作用。然而,在油菜中 的功能作用仍知之甚少。在本研究中,从油菜基因组中鉴定出 19 个 ,分别从 、 、 、 和 的基因组中鉴定出 9、10、10、18 和 20 个成员。然后我们分析了它们的序列特征、系统发育关系、基因结构和保守结构域,并探讨了 和 中 成员的共线性关系。接下来,我们重点分析了油菜 成员的组织表达和胁迫响应表达模式,并使用 qPCR 检测了它们在 ABA、MeJA 和水分亏缺干旱处理下的表达谱。转录组数据分析和 qPCR 检测表明, 表现出多种胁迫响应表达模式。 和 可能通过与 NAC 转录因子相互作用而发挥作用,被筛选为主要的干旱调节成员。我们的研究结果为 基因家族在油菜非生物胁迫响应,特别是干旱胁迫响应中的功能分析提供了坚实的基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/00b1b65a5e4e/KPSB_A_2379128_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/f06c840ba83e/KPSB_A_2379128_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/2f765d61777a/KPSB_A_2379128_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/ef16663e164f/KPSB_A_2379128_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/1db940b7cf77/KPSB_A_2379128_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/014a1540dcfb/KPSB_A_2379128_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/42584840bd09/KPSB_A_2379128_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/627e2349c7e0/KPSB_A_2379128_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/00b1b65a5e4e/KPSB_A_2379128_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/f06c840ba83e/KPSB_A_2379128_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/2f765d61777a/KPSB_A_2379128_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/ef16663e164f/KPSB_A_2379128_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/1db940b7cf77/KPSB_A_2379128_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/014a1540dcfb/KPSB_A_2379128_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/42584840bd09/KPSB_A_2379128_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/627e2349c7e0/KPSB_A_2379128_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf4/11249032/00b1b65a5e4e/KPSB_A_2379128_F0008_OC.jpg

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