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快速魔角旋转 NMR 光谱法研究氟化配体与半乳凝集素-3 碳水化合物识别结构域的微晶配合物。

F Fast Magic-Angle Spinning NMR Spectroscopy on Microcrystalline Complexes of Fluorinated Ligands and the Carbohydrate Recognition Domain of Galectin-3.

机构信息

Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, United States.

Department of Structural Biology, University of Pittsburgh School of Medicine, 3501 Fifth Ave., Pittsburgh, Pennsylvania 15261, United States.

出版信息

Biochemistry. 2024 Sep 3;63(17):2207-2216. doi: 10.1021/acs.biochem.4c00232. Epub 2024 Jul 15.

Abstract

Structural characterization of protein-ligand binding interfaces at atomic resolution is essential for improving the design of specific and potent inhibitors. Herein, we explored fast F- and H-detected magic angle spinning NMR spectroscopy to investigate the interaction between two fluorinated ligand diastereomers with the microcrystalline galectin-3 carbohydrate recognition domain. The detailed environment around the fluorine atoms was mapped by 2D C-F and H-F dipolar correlation experiments and permitted characterization of the binding interface. Our results demonstrate that F MAS NMR is a powerful tool for detailed characterization of protein-ligand interfaces and protein interactions at the atomic level.

摘要

在原子分辨率下对蛋白质-配体结合界面进行结构表征对于提高特异性和强效抑制剂的设计至关重要。在此,我们探索了快速 F 和 H 检测魔角旋转 NMR 光谱法,以研究两种氟化配体非对映异构体与微晶半乳糖凝集素-3 碳水化合物识别结构域之间的相互作用。通过二维 C-F 和 H-F 偶极相关实验绘制了氟原子周围的详细环境图,并允许对结合界面进行特征描述。我们的结果表明,F MAS NMR 是一种用于在原子水平上详细表征蛋白质-配体界面和蛋白质相互作用的强大工具。

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2
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3
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Nat Chem Biol. 2022 May;18(5):441-450. doi: 10.1038/s41589-022-00997-6. Epub 2022 Apr 28.
4
High-pH structure of EmrE reveals the mechanism of proton-coupled substrate transport.
Nat Commun. 2022 Feb 18;13(1):991. doi: 10.1038/s41467-022-28556-6.
5
Role of galectin 3 binding protein in cancer progression: a potential novel therapeutic target.
J Transl Med. 2021 Sep 26;19(1):405. doi: 10.1186/s12967-021-03085-w.
6
Selective Modulation of Dynamic Protein Complexes.
Cell Chem Biol. 2020 Aug 20;27(8):986-997. doi: 10.1016/j.chembiol.2020.07.019. Epub 2020 Aug 11.
7
Small molecule inhibitors targeting the PD-1/PD-L1 signaling pathway.
Acta Pharmacol Sin. 2021 Jan;42(1):1-9. doi: 10.1038/s41401-020-0366-x. Epub 2020 Mar 9.
8
Two-dimensional F-C correlation NMR for F resonance assignment of fluorinated proteins.
J Biomol NMR. 2020 Mar;74(2-3):193-204. doi: 10.1007/s10858-020-00306-0. Epub 2020 Feb 22.
9
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J Phys Chem B. 2019 Dec 19;123(50):10680-10690. doi: 10.1021/acs.jpcb.9b08919. Epub 2019 Dec 10.
10
F NMR relaxation studies of fluorosubstituted tryptophans.
J Biomol NMR. 2019 Sep;73(8-9):401-409. doi: 10.1007/s10858-019-00268-y. Epub 2019 Aug 21.

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