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二维 F-C 相关 NMR 用于氟代蛋白 F 共振的归属。

Two-dimensional F-C correlation NMR for F resonance assignment of fluorinated proteins.

机构信息

Department of Chemistry, Massachusetts Institute of Technology, 170 Albany Street, Cambridge, MA, 02139, USA.

出版信息

J Biomol NMR. 2020 Mar;74(2-3):193-204. doi: 10.1007/s10858-020-00306-0. Epub 2020 Feb 22.

Abstract

F solid-state NMR is an excellent approach for measuring long-range distances for structure determination and for studying molecular motion. For multi-fluorinated proteins, assignment of F chemical shifts has been traditionally carried out using mutagenesis. Here we show 2D F-C correlation experiments that allow efficient assignment of the F chemical shifts. We have compared several rotational-echo double-resonance-based pulse sequences and F-C cross polarization (CP) for 2D F-C correlation. We found that direct transferred-echo double-resonance (TEDOR) transfer from F to C and vice versa outperforms out-and-back coherence transfer schemes. F detection gives twofold higher sensitivity over C detection for the 2D correlation experiment. At MAS frequencies of 25-35 kHz, double-quantum F-C CP has higher coherence transfer efficiencies than zero-quantum CP. The most efficient TEDOR transfer experiment has higher sensitivity than the most efficient double-quantum CP experiment. We demonstrate these 2D F-C correlation experiments on the model compounds t-Boc-4F-phenylalanine and GB1. Application of the 2D F-C TEDOR correlation experiment to the tetrameric influenza BM2 transmembrane peptide shows intermolecular C-F cross peaks that indicate that the BM2 tetramers cluster in the lipid bilayer in an antiparallel fashion. This clustering may be relevant for the virus budding function of this protein.

摘要

F 固态 NMR 是一种用于测量结构确定和分子运动的远程距离的极好方法。对于多氟化蛋白质,F 化学位移的分配传统上是使用诱变来进行的。在这里,我们展示了允许有效分配 F 化学位移的 2D F-C 相关实验。我们比较了几种基于旋转回波双共振的脉冲序列和 F-C 交叉极化 (CP) 用于 2D F-C 相关。我们发现,从 F 到 C 的直接转移回波双共振 (TEDOR) 转移和反之亦然优于来回相干转移方案。对于 2D 相关实验,F 检测的灵敏度比 C 检测高两倍。在 MAS 频率为 25-35 kHz 时,双量子 F-C CP 比零量子 CP 具有更高的相干转移效率。最有效的 TEDOR 转移实验比最有效的双量子 CP 实验具有更高的灵敏度。我们在模型化合物 t-Boc-4F-苯丙氨酸和 GB1 上演示了这些 2D F-C 相关实验。将 2D F-C TEDOR 相关实验应用于四聚体流感 BM2 跨膜肽表明存在分子间 C-F 交叉峰,表明 BM2 四聚体以反平行方式在脂质双层中聚集。这种聚类可能与该蛋白质的病毒出芽功能有关。

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