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揭示人锰超氧化物歧化酶产物抑制的原子和电子机制。

Revealing the atomic and electronic mechanism of human manganese superoxide dismutase product inhibition.

机构信息

Eppley Institute for Research in Cancer and Allied Diseases, 986805 Nebraska Medical Center, Omaha, NE, 68198-6805, USA.

Second Target Station, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, TN, 37831, USA.

出版信息

Nat Commun. 2024 Jul 16;15(1):5973. doi: 10.1038/s41467-024-50260-w.

Abstract

Human manganese superoxide dismutase (MnSOD) is a crucial oxidoreductase that maintains the vitality of mitochondria by converting superoxide (O) to molecular oxygen (O) and hydrogen peroxide (HO) with proton-coupled electron transfers (PCETs). Human MnSOD has evolved to be highly product inhibited to limit the formation of HO, a freely diffusible oxidant and signaling molecule. The product-inhibited complex is thought to be composed of a peroxide (O) or hydroperoxide (HO) species bound to Mn ion and formed from an unknown PCET mechanism. PCET mechanisms of proteins are typically not known due to difficulties in detecting the protonation states of specific residues that coincide with the electronic state of the redox center. To shed light on the mechanism, we combine neutron diffraction and X-ray absorption spectroscopy of the product-bound, trivalent, and divalent states of the enzyme to reveal the positions of all the atoms, including hydrogen, and the electronic configuration of the metal ion. The data identifies the product-inhibited complex, and a PCET mechanism of inhibition is constructed.

摘要

人锰超氧化物歧化酶(MnSOD)是一种关键的氧化还原酶,通过质子耦合电子转移(PCET)将超氧化物(O)转化为分子氧(O)和过氧化氢(HO),从而维持线粒体的活力。人 MnSOD 已经进化到高度产物抑制,以限制 HO 的形成,HO 是一种自由扩散的氧化剂和信号分子。产物抑制复合物被认为是由结合在 Mn 离子上的过氧化物(O)或过氢氧化物(HO)物种组成,并通过未知的 PCET 机制形成。由于难以检测与氧化还原中心电子态同时发生的特定残基的质子化状态,蛋白质的 PCET 机制通常不为人知。为了阐明该机制,我们结合酶的产物结合态、三价态和二价态的中子衍射和 X 射线吸收光谱,揭示了包括氢原子在内的所有原子的位置和金属离子的电子构型。该数据确定了产物抑制复合物,并构建了一个抑制的 PCET 机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ad4d/11252399/0e6ed4990b92/41467_2024_50260_Fig1_HTML.jpg

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