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大豆()低磷胁迫下 Whirly 基因家族的全基因组鉴定及其潜在功能。

Genome-Wide Identification of the Whirly Gene Family and Its Potential Function in Low Phosphate Stress in Soybean ().

机构信息

Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou 450046, China.

College of Information and Management Science, Henan Agricultural University, Zhengzhou 450046, China.

出版信息

Genes (Basel). 2024 Jun 25;15(7):833. doi: 10.3390/genes15070833.

Abstract

The () gene family, functioning as transcription factors, plays an essential role in the regulation of plant metabolic responses, which has been demonstrated across multiple species. However, the gene family and its functions in soybean remains unclear. In this paper, we conducted genome-wide screening and identification to characterize the gene family. Seven members were identified and randomly distributed across six chromosomes. The phylogenetic evolutionary tree of genes in soybean and other species was divided into five clades. An in-depth analysis revealed that segmental duplications significantly contributed to the expansion of , and the gene members may have experienced evolutionary pressure for purifying selection in soybeans. The analysis of promoter Cis-elements in suggested their potential significance in addressing diverse stress conditions. The expression patterns of exhibited tissue-specific variations throughout the different stages of soybean development. Additionally, six genes exhibited different responses to low phosphate stress. These findings will provide a theoretical basis and valuable reference for the future exploration of gene function.

摘要

()基因家族作为转录因子,在植物代谢反应的调节中发挥着重要作用,这在多个物种中都得到了证实。然而,大豆中的基因家族及其功能尚不清楚。在本文中,我们进行了全基因组筛选和鉴定,以研究基因家族。我们鉴定了 7 个成员,它们随机分布在 6 条染色体上。大豆和其他物种基因的系统进化树分为 5 个分支。深入分析表明,片段重复显著促进了的扩张,并且基因成员可能在进化压力下经历了大豆中的纯化选择。对启动子顺式元件的分析表明,它们在应对不同的胁迫条件方面具有潜在的重要性。在大豆发育的不同阶段,基因的表达模式表现出组织特异性的变化。此外,有 6 个基因对低磷胁迫表现出不同的响应。这些发现将为未来探索基因功能提供理论基础和有价值的参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/edc4/11275625/498873809a6c/genes-15-00833-g001.jpg

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